exRNAdisease

General Information

Database ID:

exR0728637

RNA Name:

hsa-miR-15b-5p

RNA Type:

miRNA

Chromosome:

chr3

Starnd:

Coordinate:

Start Site(bp):

160404607

End Site(bp):

160404628

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
URM1	chr9	128371361	128392016	+
STEAP3	chr2	119223831	119265652	+
ABCF3	chr3	184186023	184194012	+
RAB11FIP1	chr8	37858618	37899497	-
FAM89A	chr1	231018958	231040254	-
LITAF	chr16	11547722	11636381	-
ZBTB34	chr9	126860665	126885878	+
LY6E	chr8	143017982	143023832	+
ATG14	chr14	55366391	55411830	-
MINDY2	chr15	58771192	58861900	+
MRPS2	chr9	135499984	135504673	+
DCAF7	chr17	63550477	63594279	+
ANKRD17	chr4	73073376	73258798	-
JARID2	chr6	15246069	15522042	+
RAPGEF1	chr9	131576770	131740074	-
MLEC	chr12	120687149	120701859	+
FAM102B	chr1	108560089	108644900	+
ARRDC4	chr15	97960703	97973833	+
ERG28	chr14	75649791	75660876	-
CRY2	chr11	45847118	45883248	+
TSPYL2	chrX	53082367	53088540	+
E2F3	chr6	20401879	20493714	+
ABHD2	chr15	89087459	89202355	+
PIK3R1	chr5	68215756	68301821	+
MED11	chr17	4731428	4733607	+
SCAMP4	chr19	1905372	1926013	+
SRPK1	chr6	35832966	35921342	-
FLOT2	chr17	28879335	28897733	-
MYB	chr6	135181308	135219173	+
HDGF	chr1	156742109	156766925	-

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000540	chr14	55799534	55821940	+
hsa_circ_0001005	chr2	53921020	53978078	-
hsa_circ_0001723	chr7	91924202	91948826	+
hsa_circ_0000458	chr12	124071293	124074996	+
hsa_circ_0001699	chr7	40027197	40041630	+
hsa_circ_0001387	chr4	1902352	1936989	+
hsa_circ_0001168	chr20	47691321	47707559	+
hsa_circ_0000552	chr14	71880664	71948928	+
hsa_circ_0000038	chr1	28800065	28802803	+
hsa_circ_0000652	chr15	90984737	90986710	+
hsa_circ_0001472	chr5	36953719	36976504	+
hsa_circ_0001263	chr3	5215701	5216099	+
hsa_circ_0000799	chr17	65941524	65972074	+
hsa_circ_0001164	chr20	45891031	45923523	-
hsa_circ_0000032	chr1	25666964	25669564	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
LINC00649	chr21	33915534	33977691	+
AL031282.2	chr1	1702736	1737688	-
MZF1-AS1	chr19	58559129	58574797	+
SNHG16	chr17	76557764	76565348	+
XIST	chrX	73820649	73852723	-
STAG3L5P-PVRIG2P-PILRB	chr7	100336104	100367831	+
NUTM2B-AS1	chr10	79661394	79826594	-
MCM3AP-AS1	chr21	46229196	46259390	+
AL391244.1	chr1	1420245	1422691	+
AC003092.1	chr7	94022833	94066661	+
AC114980.1	chr5	93860669	93863825	-
AC079781.5	chr7	97851688	97972985	-
AC021092.1	chr19	44103007	44113183	-
AC009022.1	chr16	69976297	70065948	-
AL359924.1	chr1	237862175	237928321	+
FGD5-AS1	chr3	14920347	14948424	-
MIR497HG	chr17	7015818	7019659	-
AC021078.1	chr5	149494314	149504670	-
LINC01184	chr5	127939152	128083172	-
NEAT1	chr11	65422774	65445540	+
SNHG1	chr11	62851984	62855953	-
AC002470.2	chr22	20979462	20998121	+
MIR29B2CHG	chr1	207801518	207879115	-
LINC00662	chr19	27681072	27794005	-
MIR503HG	chrX	134543119	134546642	-
SNHG25	chr17	64145970	64146476	+
LINC02035	chr3	122886941	122892416	+
NUTM2A-AS1	chr10	87201647	87342612	-
HCG18	chr6	30286690	30327382	-
SNHG12	chr1	28578538	28583132	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference