exRNAdisease

Entry Detail

General Information

Database ID:

exR0728668

RNA Name:

hsa-miR-18b-5p

RNA Type:

miRNA

Chromosome:

chrX

Starnd:

-

Coordinate:

Start Site(bp):

134170084

End Site(bp):

134170106

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ADAT2	chr6	143422832	143450695	-
ATP2B1	chr12	89588049	89709300	-
DCAF7	chr17	63550477	63594279	+
DNAJC9	chr10	73183362	73247255	-
LARP4	chr12	50392383	50480004	+
MAP3K20	chr2	173075435	173268015	+
SIK2	chr11	111602449	111730855	+
SLC41A1	chr1	205789094	205813748	-
UBE2Z	chr17	48908407	48929056	+
ZNF12	chr7	6688433	6706947	-
ARHGEF39	chr9	35658875	35675866	-
PHKA2	chrX	18892298	18984114	-

miRNA targets:

NA

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000712	chr16	68208276	68225678	+
hsa_circ_0001186	chr21	35475133	35475818	+
hsa_circ_0001247	chr22	46125304	46136418	+
hsa_circ_0000921	chr19	30476129	30477324	+
hsa_circ_0000943	chr19	47421744	47440665	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC073896.4	chr12	56162359	56190284	-
AC093010.3	chr3	114314501	114329714	-
AC145207.5	chr17	81878425	81881106	-
AL162171.3	chr14	88589231	88592408	+
CASC2	chr10	118046279	118210158	+
GAS5	chr1	173858559	173868882	-
LINC00847	chr5	180830326	180839742	+
NEAT1	chr11	65422774	65445540	+
SNHG1	chr11	62851984	62855953	-
SNHG15	chr7	44983023	44986961	-
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA