exRNAdisease

General Information

Database ID:

exR0728706

RNA Name:

hsa-miR-19a-3p

RNA Type:

miRNA

Chromosome:

chr13

Starnd:

Coordinate:

Start Site(bp):

91350939

End Site(bp):

91350961

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ATP6V1B2	chr8	20197381	20226819	+
BCL7A	chr12	122019422	122062044	+
BRWD1	chr21	39184176	39321559	-
BTBD7	chr14	93237550	93333092	-
CAMTA1	chr1	6785454	7769706	+
CASP2	chr7	143288215	143307696	+
CCDC47	chr17	63745255	63776351	-
DNAJC16	chr1	15526813	15592379	+
HIP1	chr7	75533298	75738962	-
HOMER1	chr5	79372636	79514134	-
MEF2D	chr1	156463727	156500779	-
MYLIP	chr6	16129086	16148248	+
RCOR1	chr14	102592649	102730561	+
RFX1	chr19	13961530	14007039	-
RPS23	chr5	82273320	82278396	-
TMEM181	chr6	158536436	158635428	+
ATF7IP	chr12	14365632	14502935	+
CAMSAP1	chr9	135808487	135907546	-
CDS1	chr4	84583127	84651334	+
CHIC1	chrX	73563200	73687102	+
DTL	chr1	212035553	212107400	+
MARCKS	chr6	113857345	113863475	+
SCYL2	chr12	100267140	100341715	+
SPAG7	chr17	4959226	4967817	-
SPOPL	chr2	138501770	138573547	+
STK33	chr11	8391868	8594289	-
TNFRSF12A	chr16	3018445	3022383	+

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0001454	chr4	154524454	154533552	+
hsa_circ_0001186	chr21	35475133	35475818	+
hsa_circ_0000384	chr12	27867712	27877119	+
hsa_circ_0001605	chr6	42903447	42905047	+
hsa_circ_0000155	chr1	168007608	168014465	+
hsa_circ_0001495	chr5	68470703	68471364	+
hsa_circ_0000943	chr19	47421744	47440665	+
hsa_circ_0001164	chr20	45891031	45923523	-

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC005394.2	chr19	28435388	28727680	-
AC010997.3	chr10	75279726	75401246	-
AC011498.2	chr19	4447304	4448217	+
AC011503.2	chr19	23927788	23929287	+
AC021078.1	chr5	149494314	149504670	-
AC135050.6	chr16	31122235	31124064	+
AL049840.4	chr14	103694516	103695050	-
AL158206.1	chr9	19453209	19455173	+
AL158825.2	chr9	75009828	75016036	-
H19	chr11	1995176	2001470	-
HAGLR	chr2	176164051	176188958	-
LAMTOR5-AS1	chr1	110347116	110443817	+
LINC00667	chr18	5237826	5290608	+
MCM3AP-AS1	chr21	46229196	46259390	+
NEAT1	chr11	65422774	65445540	+
SNHG20	chr17	77086716	77099902	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference