exRNAdisease

Entry Detail

General Information

Database ID:

exR0728720

RNA Name:

hsa-miR-204-5p

RNA Type:

miRNA

Chromosome:

chr9

Starnd:

-

Coordinate:

Start Site(bp):

70810031

End Site(bp):

70810052

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AK2	chr1	33007940	33080996	-
C5orf51	chr5	41904188	41921636	+
CA12	chr15	63321378	63381846	-
CDT1	chr16	88803789	88809258	+
HMOX1	chr22	35380361	35394207	+
MDK	chr11	46380756	46383837	+
MLXIP	chr12	122078756	122147344	+
RCC2	chr1	17406760	17439677	-
RDH11	chr14	67676800	67695793	-
STARD13	chr13	33103137	33350630	-
TMEM237	chr2	201620184	201643570	-
VASP	chr19	45506579	45526983	+

miRNA targets:

NA

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0001588	chr6	26204839	26205043	+
hsa_circ_0001387	chr4	1902352	1936989	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC010442.1	chr5	466124	473098	-
AP000553.1	chr22	21652270	21670237	+
DSCAM-AS1	chr21	40383083	40385358	+
EBLN3P	chr9	37079645	37090928	+
MALAT1	chr11	65497688	65506516	+
MCM3AP-AS1	chr21	46229196	46259390	+
NEAT1	chr11	65422774	65445540	+
NORAD	chr20	36045618	36051018	-
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA