exRNAdisease

Entry Detail

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General Information

Database ID: exR0728725 RNA Name: hsa-miR-206 RNA Type: miRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 52144401 End Site(bp): 52144422 External Links: hsa-miR-206

Disease Information

Disease Name: Prostate Cancer Disease Category: Cancers MeSH ID: D011471 Type: Neoplasms/Digestive System Neoplasms Alias: Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID: GSE54010 Description: miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH) Experimental Design: Cancer vs Control Case Disease Type: Prostate Cancer Case Disease SubType: Advanced Prostate Cancer Case Sample: Advanced Prostate Cancer Control Sample: Benign Prostatic Hyperplasia Number of Case: 7 Number of Control: 5 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CAPNS1 chr19 36139953 36150353 + NPEPPS chr17 47522942 47623276 + SPRED1 chr15 38252836 38357249 + SLC30A7 chr1 100896076 100981757 + DDX5 chr17 64498254 64508199 - TRIM2 chr4 153152342 153339317 + DLG3 chrX 70444835 70505490 + LASP1 chr17 38869859 38921770 + RTL8B chrX 135020513 135022542 - FOXP1 chr3 70952817 71583993 - SDCBP chr8 58552924 58582859 + NME1-NME2 chr17 51153590 51171744 + NR2C2 chr3 14947584 15053600 + TNRC6B chr22 40044817 40335808 + CREB3L2 chr7 137874979 138002086 - NETO2 chr16 47077703 47143945 - ZNF518A chr10 96129715 96205288 + PGM2 chr4 37826660 37862937 + PRR12 chr19 49591182 49626439 + PTBP1 chr19 797075 812327 + CALM1 chr14 90396502 90408268 + NME2 chr17 51165435 51171747 + AP1S1 chr7 101154456 101161596 + MAPK1 chr22 21754500 21867680 - GID4 chr17 18039408 18068405 + SMCO4 chr11 93478472 93543391 - SS18 chr18 26016253 26091217 - CWC15 chr11 94962620 94973586 - WIPF2 chr17 40219304 40284136 + WDR5 chr9 134135365 134159968 + miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0000816 chr17 80521229 80526077 + lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005332.7 chr17 68188547 68189165 + AC145207.5 chr17 81878425 81881106 - LINC00641 chr14 21200079 21206900 - MALAT1 chr11 65497688 65506516 + MIR4435-2HG chr2 111006015 111523376 - NEAT1 chr11 65422774 65445540 + RMRP chr9 35657751 35658018 - Display:

Experiment Detail

GEO ID: GSE54010 Sample Source: Urine Source Fraction: Urine Platform: GPL15159 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1183 Sample treatment protocol: NA RNA Extract protocol: Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA). RNA library preparation protocol: 400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA