exRNAdisease

General Information

Database ID:

exR0728746

RNA Name:

hsa-miR-214-3p

RNA Type:

miRNA

Chromosome:

chr1

Starnd:

Coordinate:

Start Site(bp):

172138816

End Site(bp):

172138837

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
MTMR12	chr5	32226994	32312987	-
AP3M1	chr10	74120255	74151063	-
AMER1	chrX	64185117	64205708	-
GDI1	chrX	154436913	154443467	+
RPUSD1	chr16	784974	788397	-
SMG5	chr1	156249224	156282825	-
DHX36	chr3	154272546	154324487	-
PIP5K1C	chr19	3630183	3700479	-
C19orf47	chr19	40319536	40348527	-
MTMR3	chr22	29883155	30030866	+
ABHD2	chr15	89087459	89202355	+
MAPKAPK2	chr1	206684944	206734283	+
RHPN1	chr8	143368876	143384221	+
HDLBP	chr2	241227264	241317061	-
ARHGAP35	chr19	46860997	47005077	+
YWHAB	chr20	44885702	44908532	+
WDR5	chr9	134135365	134159968	+
RPS6KA1	chr1	26529761	26575030	+
JPT1	chr17	75135248	75168281	-
SEC61A1	chr3	128051641	128071683	+
TMEM161B	chr5	88189633	88269476	-
NECTIN1	chr11	119623408	119729200	-
SOX11	chr2	5692384	5701385	+
MYH9	chr22	36281277	36388067	-
RAB15	chr14	64945814	64973226	-
PLAGL2	chr20	32192504	32207743	-
TGIF2	chr20	36573488	36593950	+
NRIP1	chr21	14961235	15065936	-
LYSMD2	chr15	51723011	51751585	-
KMT2D	chr12	49018975	49059774	-

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000540	chr14	55799534	55821940	+
hsa_circ_0001168	chr20	47691321	47707559	+
hsa_circ_0001146	chr20	34241449	34246936	-
hsa_circ_0000799	chr17	65941524	65972074	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC008040.1	chr3	169939353	169966734	-
AC010442.1	chr5	466124	473098	-
AC016876.2	chr17	7581964	7584086	-
AC068790.9	chr12	124085761	124088598	+
AC109460.3	chr16	28974804	28990775	+
ADAMTSL4-AS1	chr1	150560202	150574552	-
AL031282.2	chr1	1702736	1737688	-
AL160006.1	chr1	110058340	110062555	+
EPB41L4A-AS1	chr5	112160526	112164818	+
FGD5-AS1	chr3	14920347	14948424	-
LINC00665	chr19	36313067	36331770	-
LINC01535	chr19	37251885	37265535	+
MIR17HG	chr13	91347820	91354579	+
NEAT1	chr11	65422774	65445540	+
POLR2J4	chr7	43940895	44019175	-
SNHG16	chr17	76557764	76565348	+
STAG3L5P-PVRIG2P-PILRB	chr7	100336104	100367831	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference