exRNAdisease

Entry Detail

General Information

Database ID:

exR0728797

RNA Name:

hsa-miR-296-3p

RNA Type:

miRNA

Chromosome:

chr20

Starnd:

-

Coordinate:

Start Site(bp):

58817626

End Site(bp):

58817647

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ATXN7	chr3	63864557	64003462	+
BAZ2A	chr12	56595596	56636816	-
COL6A1	chr21	45981769	46005050	+
CYLD	chr16	50742050	50801935	+
FAM210A	chr18	13663347	13726663	-
HMGCS1	chr5	43287470	43313512	-
HOXC10	chr12	53985065	53990279	+
HP1BP3	chr1	20740266	20787323	-
KAT6A	chr8	41929479	42051994	-
KMT2D	chr12	49018975	49059774	-
KPNA6	chr1	32108056	32176563	+
LASP1	chr17	38869859	38921770	+
MINK1	chr17	4833340	4898061	+
NFAT5	chr16	69565094	69704666	+
PFN2	chr3	149964904	150050788	-
RTKN	chr2	74425835	74442422	-
SERF2	chr15	43777087	43802589	+
SLC2A4RG	chr20	63739776	63744050	+
STK35	chr20	2101827	2177038	+
TMEM97	chr17	28319200	28328685	+
TP53	chr17	7661779	7687550	-
TULP3	chr12	2877223	2941138	+
UBA2	chr19	34428352	34471251	+
VANGL1	chr1	115641970	115698224	+
ZFP91	chr11	58579063	58621550	+

miRNA targets:

NA

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0001867	chr9	86294689	86297981	-
hsa_circ_0001866	chr9	86293355	86297981	-
hsa_circ_0001046	chr2	97024782	97033111	+
hsa_circ_0001146	chr20	34241449	34246936	-

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC009133.5	chr16	29808679	29812227	+
AC016831.1	chr7	130876809	130913310	-
AC023509.1	chr12	53441741	53467528	+
NEAT1	chr11	65422774	65445540	+
NORAD	chr20	36045618	36051018	-
PCBP2-OT1	chr12	53464468	53465057	+
SNHG25	chr17	64145970	64146476	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA