exRNAdisease

General Information

Database ID:

exR0728811

RNA Name:

hsa-miR-301a-3p

RNA Type:

miRNA

Chromosome:

chr17

Starnd:

Coordinate:

Start Site(bp):

59151149

End Site(bp):

59151171

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ALDH3A2	chr17	19648136	19685760	+
TNFRSF1B	chr1	12166991	12209228	+
CAMTA1	chr1	6785454	7769706	+
CPEB4	chr5	173888349	173961980	+
ZDHHC7	chr16	84974181	85011535	-
STARD13	chr13	33103137	33350630	-
APCDD1	chr18	10454635	10489949	+
HABP4	chr9	96450169	96491336	+
TBC1D5	chr3	17157162	18444817	-
ZNF12	chr7	6688433	6706947	-
PTEN	chr10	87863625	87971930	+
NPTX1	chr17	80466834	80477843	-
APOL6	chr22	35648446	35668404	+
CD151	chr11	832887	839831	+
PPP1R9A	chr7	94907202	95296415	+
KIAA0232	chr4	6781375	6884170	+
ZNF594	chr17	5179535	5191868	-
LIPA	chr10	89213569	89414557	-
LYSMD2	chr15	51723011	51751585	-
MLPH	chr2	237485428	237555322	+
EMP1	chr12	13196723	13219941	+
KLF4	chr9	107484852	107490482	-
RTN4	chr2	54972187	55112621	-
SCAF11	chr12	45919131	45992120	-
RNF11	chr1	51236273	51273447	+
XXYLT1	chr3	195068284	195271159	-
SHANK2	chr11	70467856	71252577	-
NSD2	chr4	1871393	1982207	+
SLC7A5	chr16	87830023	87869507	-
MTMR9	chr8	11284816	11328146	+

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000591	chr15	41961025	41962156	+
hsa_circ_0001454	chr4	154524454	154533552	+
hsa_circ_0000384	chr12	27867712	27877119	+
hsa_circ_0001723	chr7	91924202	91948826	+
hsa_circ_0000892	chr19	11941431	12014514	+
hsa_circ_0001605	chr6	42903447	42905047	+
hsa_circ_0000155	chr1	168007608	168014465	+
hsa_circ_0001495	chr5	68470703	68471364	+
hsa_circ_0000943	chr19	47421744	47440665	+
hsa_circ_0000018	chr1	15860731	15863309	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC011503.2	chr19	23927788	23929287	+
AC021092.1	chr19	44103007	44113183	-
AC135050.6	chr16	31122235	31124064	+
AC234582.1	chr1	155195004	155205495	+
AL031595.3	chr22	44139365	44153626	+
AL049840.4	chr14	103694516	103695050	-
AL158206.1	chr9	19453209	19455173	+
AL158825.2	chr9	75009828	75016036	-
AL603839.3	chr1	40493157	40508661	-
CKMT2-AS1	chr5	81201341	81301565	-
H19	chr11	1995176	2001470	-
HAGLR	chr2	176164051	176188958	-
KCNQ1OT1	chr11	2608328	2699994	-
LINC01089	chr12	121795267	121803906	-
MIR17HG	chr13	91347820	91354579	+
NEAT1	chr11	65422774	65445540	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference