exRNAdisease

Entry Detail

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General Information

Database ID: exR0728951 RNA Name: hsa-miR-330-3p RNA Type: miRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 45639009 End Site(bp): 45639031 External Links: hsa-miR-330-3p

Disease Information

Disease Name: Prostate Cancer Disease Category: Cancers MeSH ID: D011471 Type: Neoplasms/Digestive System Neoplasms Alias: Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID: GSE54010 Description: miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH) Experimental Design: Cancer vs Control Case Disease Type: Prostate Cancer Case Disease SubType: Advanced Prostate Cancer Case Sample: Advanced Prostate Cancer Control Sample: Benign Prostatic Hyperplasia Number of Case: 7 Number of Control: 5 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ANP32B chr9 97983341 98015943 + ATRX chrX 77504878 77786233 - BCL2L11 chr2 111119378 111168445 + CBX2 chr17 79778148 79787983 + CCSER2 chr10 84328586 84518521 + CRCP chr7 66114604 66154568 + DAG1 chr3 49468703 49535618 + ERLIN1 chr10 100150094 100186033 - GNAI2 chr3 50226292 50259362 + HNRNPAB chr5 178204533 178211163 + MRFAP1 chr4 6640091 6642745 + MTMR12 chr5 32226994 32312987 - NPAT chr11 108157215 108222638 - PFN1 chr17 4945652 4949061 - PKN2 chr1 88684222 88836255 + RAB10 chr2 26034084 26137454 + SNX27 chr1 151612006 151699091 + TNKS chr8 9555912 9782346 + TOMM34 chr20 44942130 44960397 - TRIM25 chr17 56836387 56914080 - miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0000591 chr15 41961025 41962156 + hsa_circ_0000540 chr14 55799534 55821940 + hsa_circ_0001731 chr7 100731990 100738448 + hsa_circ_0001168 chr20 47691321 47707559 + lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC020978.7 chr16 68224713 68227734 + AC079781.5 chr7 97851688 97972985 - AC124045.1 chr3 44667412 44669364 + AC125257.1 chr17 41848518 41851447 - AL132655.1 chr20 58833809 58836529 - AL137129.1 chr14 61734138 61776260 + AL157392.3 chr10 13631143 13668445 + FGD5-AS1 chr3 14920347 14948424 - MIR663AHG chr20 26167817 26251546 - NEAT1 chr11 65422774 65445540 + OIP5-AS1 chr15 41283990 41309737 + SNHG25 chr17 64145970 64146476 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE54010 Sample Source: Urine Source Fraction: Urine Platform: GPL15159 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1183 Sample treatment protocol: NA RNA Extract protocol: Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA). RNA library preparation protocol: 400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA