Entry Detail


General Information

Database ID:exR0729143
RNA Name:hsa-miR-425-5p
RNA Type:miRNA
Chromosome:chr3
Starnd:-
Coordinate:
Start Site(bp):49020199End Site(bp):49020221
External Links:hsa-miR-425-5p



Disease Information

Disease Name:Prostate Cancer
Disease Category:Cancers
MeSH ID:D011471
Type:Neoplasms/Digestive System Neoplasms
Alias:Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate



Expression Detail

GEO ID:GSE54010
Description:miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:Cancer vs Control
Case Disease Type:Prostate Cancer
Case Disease SubType:Advanced Prostate Cancer
Case Sample:Advanced Prostate Cancer
Control Sample:Benign Prostatic Hyperplasia
Number of Case:7
Number of Control:5
Number of Samples:12





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABL2
chr1
179099330
179229684
-
FOXC1
chr6
1609915
1613897
+
SH3PXD2A
chr10
103594027
103855543
-
SHC1
chr1
154962298
154974395
-
SLC16A2
chrX
74421493
74533917
+
TRIM22
chr11
5689697
5737089
+
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000591
chr15
41961025
41962156
+
hsa_circ_0000987
chr2
30748452
30756180
+
hsa_circ_0001151
chr20
35236117
35236221
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005034.3
chr2
75697583
75697996
+
AC120036.4
chr8
47190772
47193262
+
KCNQ1OT1
chr11
2608328
2699994
-
LINC01184
chr5
127939152
128083172
-
MALAT1
chr11
65497688
65506516
+
MCM3AP-AS1
chr21
46229196
46259390
+
NEAT1
chr11
65422774
65445540
+
SNHG7
chr9
136721366
136728184
-
SNHG8
chr4
118278709
118285316
+
TUG1
chr22
30969245
30979395
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE54010
Sample Source:Urine
Source Fraction:Urine
Platform:GPL15159
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1183
Sample treatment protocol:NA
RNA Extract protocol:Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA