exRNAdisease

General Information

Database ID:

exR0729251

RNA Name:

hsa-miR-485-5p

RNA Type:

miRNA

Chromosome:

chr14

Starnd:

Coordinate:

Start Site(bp):

101055427

End Site(bp):

101055448

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Advanced Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ZDHHC18	chr1	26826688	26857604	+
ZNF106	chr15	42412823	42491141	-
IFI6	chr1	27666064	27672198	-
FAM102A	chr9	127940582	127980989	-
SUMF2	chr7	56064002	56080670	+
TAOK1	chr17	29390464	29551904	+
MAP7D1	chr1	36155579	36180849	+
PSKH1	chr16	67893254	67929676	+
TSPAN4	chr11	842812	867116	+
GOLGA3	chr12	132768914	132829078	-
RAB35	chr12	120095099	120117502	-
MPDU1	chr17	7583529	7592789	+
THY1	chr11	119417378	119424985	-
TSR2	chrX	54440404	54448032	+
AP1M1	chr19	16197578	16245907	+
ARRDC1	chr9	137605685	137615360	+
COQ9	chr16	57447425	57461270	+
RMI2	chr16	11249619	11381662	+
MEPCE	chr7	100428790	100434118	+
GBF1	chr10	102245532	102382899	+
KRT80	chr12	52168996	52192014	-
CAPZB	chr1	19338775	19485539	-
GRHL2	chr8	101492439	101669726	+
RHOB	chr2	20447074	20449440	+
INO80	chr15	40978880	41116280	-
ABAT	chr16	8674596	8784575	+
B4GALT5	chr20	49632945	49713878	-
RCC2	chr1	17406760	17439677	-
AKT2	chr19	40230317	40285536	-
SMAD7	chr18	48919853	48952052	-

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0001454	chr4	154524454	154533552	+
hsa_circ_0000417	chr12	69644908	69656342	+
hsa_circ_0000798	chr17	65941524	65944422	+
hsa_circ_0000552	chr14	71880664	71948928	+
hsa_circ_0001146	chr20	34241449	34246936	-
hsa_circ_0000799	chr17	65941524	65972074	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC005899.4	chr17	32328441	32329395	+
AC016065.1	chr8	6403551	6407142	-
AC016355.1	chr15	67541072	67542604	-
AC016876.2	chr17	7581964	7584086	-
AC026362.1	chr12	122975320	122982907	+
AC069281.2	chr7	100572232	100578700	-
AC074117.1	chr2	27356246	27367622	+
AC118758.3	chr7	56809214	56848800	-
AL022311.1	chr22	37876148	37895563	+
AL132655.2	chr20	58817132	58817725	-
AP000662.1	chr11	57638024	57652790	+
COL4A2-AS2	chr13	110456396	110463287	-
GAS5	chr1	173858559	173868882	-
LINC00265	chr7	39733430	39793092	+
LINC01278	chrX	63222993	63561095	-
LINC01772	chr1	16460948	16468481	+
MALAT1	chr11	65497688	65506516	+
MIR29B2CHG	chr1	207801518	207879115	-
NEAT1	chr11	65422774	65445540	+
NUTM2A-AS1	chr10	87201647	87342612	-
SNHG16	chr17	76557764	76565348	+
SNHG3	chr1	28505980	28510892	+
XIST	chrX	73820649	73852723	-
ZFHX2-AS1	chr14	23511760	23560778	+

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference