exRNAdisease

Entry Detail

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General Information

Database ID: exR0729430 RNA Name: hsa-miR-588 RNA Type: miRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 126484646 End Site(bp): 126484666 External Links: hsa-miR-588

Disease Information

Disease Name: Prostate Cancer Disease Category: Cancers MeSH ID: D011471 Type: Neoplasms/Digestive System Neoplasms Alias: Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID: GSE54010 Description: miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH) Experimental Design: Cancer vs Control Case Disease Type: Prostate Cancer Case Disease SubType: Advanced Prostate Cancer Case Sample: Advanced Prostate Cancer Control Sample: Benign Prostatic Hyperplasia Number of Case: 7 Number of Control: 5 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADGRE5 chr19 14380501 14408725 + ARHGDIA chr17 81867721 81871378 - EDEM3 chr1 184690237 184754907 - EIF1AD chr11 65996545 66002176 - FURIN chr15 90868588 90883458 + GLIS2 chr16 4314761 4339597 + NID1 chr1 235975830 236065109 - NIP7 chr16 69337996 69343106 + NT5DC3 chr12 103770453 103841234 - STK40 chr1 36339624 36385896 - TSPAN14 chr10 80454166 80533124 + TUB chr11 8019244 8106112 + ZBTB39 chr12 56998836 57006546 - miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0001025 chr2 69565029 69565697 - hsa_circ_0000384 chr12 27867712 27877119 + hsa_circ_0001247 chr22 46125304 46136418 + hsa_circ_0000284 chr11 33307958 33309057 + hsa_circ_0000126 chr1 150997086 150999803 + hsa_circ_0000744 chr17 15968183 15971435 - lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007161.3 chr7 7640752 8004053 + AL022311.1 chr22 37876148 37895563 + AL359924.1 chr1 237862175 237928321 + H19 chr11 1995176 2001470 - MIR497HG chr17 7015818 7019659 - NEAT1 chr11 65422774 65445540 + PINK1-AS chr1 20642657 20652193 - SNHG8 chr4 118278709 118285316 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE54010 Sample Source: Urine Source Fraction: Urine Platform: GPL15159 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1183 Sample treatment protocol: NA RNA Extract protocol: Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA). RNA library preparation protocol: 400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA