exRNAdisease

Entry Detail

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General Information

Database ID: exR0730513 RNA Name: hsa-miR-520c-3p RNA Type: miRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 53707506 End Site(bp): 53707527 External Links: hsa-miR-520c-3p

Disease Information

Disease Name: Prostate Cancer Disease Category: Cancers MeSH ID: D011471 Type: Neoplasms/Digestive System Neoplasms Alias: Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID: GSE54010 Description: miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH) Experimental Design: Cancer vs Control Case Disease Type: Prostate Cancer Case Disease SubType: Advanced Prostate Cancer Case Sample: Localized Prostate Cancer Control Sample: Benign Prostatic Hyperplasia Number of Case: 7 Number of Control: 5 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand PDRG1 chr20 31944337 31952046 - NAA16 chr13 41311267 41377030 + IFNAR1 chr21 33324429 33359864 + FYCO1 chr3 45917899 45995824 - MSL1 chr17 40121971 40136917 + ZFAND4 chr10 45615500 45672780 - CLCN6 chr1 11806096 11848079 + SYAP1 chrX 16719612 16765340 + AMPD2 chr1 109616104 109632053 + EIF5A2 chr3 170888418 170908644 - PTP4A1 chr6 63521746 63583436 + TNS1 chr2 217799588 218033982 - CAMK2N1 chr1 20482391 20486210 - RPP14 chr3 58306247 58324695 + PHC3 chr3 170086732 170181749 - HTD2 chr3 58306262 58318574 + MBP chr18 76978827 77133683 - SLC7A2 chr8 17497088 17570573 + TRIB1 chr8 125430358 125438403 + SIRPA chr20 1894167 1940592 + CCSAP chr1 229321011 229343294 - SRRT chr7 100875103 100888664 + CHD9 chr16 53055033 53329150 + FAM177A1 chr14 35044907 35113130 + PLAGL2 chr20 32192504 32207743 - CLIP4 chr2 29097705 29189643 + NPAS2 chr2 100820139 100996829 + LONP2 chr16 48244300 48363122 + KLHL28 chr14 44924319 45042322 - APP chr21 25880550 26171128 - miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0000943 chr19 47421744 47440665 + lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL049840.4 chr14 103694516 103695050 - ARHGAP27P1-BPTFP1-KPNA2P3 chr17 64749663 64781707 - FGD5-AS1 chr3 14920347 14948424 - MIR17HG chr13 91347820 91354579 + NEAT1 chr11 65422774 65445540 + NORAD chr20 36045618 36051018 - SNHG16 chr17 76557764 76565348 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE54010 Sample Source: Urine Source Fraction: Urine Platform: GPL15159 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1183 Sample treatment protocol: NA RNA Extract protocol: Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA). RNA library preparation protocol: 400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA