exRNAdisease

Entry Detail

General Information

Database ID:

exR0730537

RNA Name:

hsa-miR-545-3p

RNA Type:

miRNA

Chromosome:

chrX

Starnd:

-

Coordinate:

Start Site(bp):

74287126

End Site(bp):

74287147

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Localized Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ANKRD50	chr4	124664048	124712732	-
ARRB2	chr17	4710596	4721499	+
BVES	chr6	105096822	105137157	-
CREBRF	chr5	173056352	173139284	+
FAM89A	chr1	231018958	231040254	-
NAV1	chr1	201622885	201826969	+
SPECC1	chr17	20009344	20319026	+
TOB2	chr22	41433494	41446801	-
TRIM33	chr1	114392790	114511203	-
UTRN	chr6	144285701	144853034	+
WDR4	chr21	42843094	42879568	-

miRNA targets:

NA

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0001409	chr4	48835417	48859382	+
hsa_circ_0000458	chr12	124071293	124074996	+
hsa_circ_0000943	chr19	47421744	47440665	+
hsa_circ_0001452	chr4	153562079	153574079	-
hsa_circ_0001263	chr3	5215701	5216099	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC016876.2	chr17	7581964	7584086	-
AC114980.1	chr5	93860669	93863825	-
AC125257.1	chr17	41848518	41851447	-
AC245033.4	chr15	82533175	82540008	-
GAS5	chr1	173858559	173868882	-
LINC00476	chr9	95759231	95876049	-
MALAT1	chr11	65497688	65506516	+
MCM3AP-AS1	chr21	46229196	46259390	+
NEAT1	chr11	65422774	65445540	+
NORAD	chr20	36045618	36051018	-
OIP5-AS1	chr15	41283990	41309737	+
RRN3P2	chr16	29074976	29116718	+
SNHG1	chr11	62851984	62855953	-
TUG1	chr22	30969245	30979395	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID:	NA
Title:	NA
Author:	NA
Journal:	NA
Description:	NA