exRNAdisease

Entry Detail

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General Information

Database ID: exR0730684 RNA Name: hsa-miR-650 RNA Type: miRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 22822791 End Site(bp): 22822811 External Links: hsa-miR-650

Disease Information

Disease Name: Prostate Cancer Disease Category: Cancers MeSH ID: D011471 Type: Neoplasms/Digestive System Neoplasms Alias: Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID: GSE54010 Description: miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH) Experimental Design: Cancer vs Control Case Disease Type: Prostate Cancer Case Disease SubType: Advanced Prostate Cancer Case Sample: Localized Prostate Cancer Control Sample: Benign Prostatic Hyperplasia Number of Case: 7 Number of Control: 5 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand POM121C chr7 75416786 75486299 - ATXN2L chr16 28823035 28837237 + RNF220 chr1 44405194 44651724 + POLE3 chr9 113407235 113410675 - SFN chr1 26863149 26864456 + SH3GL1 chr19 4360370 4400547 - STOM chr9 121338987 121370304 - HNRNPUL1 chr19 41262496 41307787 + LMNA chr1 156082573 156140089 + SLC9A3R1 chr17 74748628 74769353 + HPCAL1 chr2 10302889 10427617 + TRAF7 chr16 2155698 2178129 + GBF1 chr10 102245532 102382899 + ZNF623 chr8 143636013 143656418 + USP22 chr17 20999596 21043760 - POLDIP3 chr22 42583721 42614962 - VHL chr3 10141008 10152220 + ABL1 chr9 130713016 130887675 + TSKU chr11 76782251 76798153 + TRAPPC10 chr21 44012309 44106552 + SLC29A1 chr6 44219553 44234142 + HIF1AN chr10 100529072 100559998 + NBL1 chr1 19596979 19658456 + AFAP1 chr4 7758714 7939926 - CBFA2T3 chr16 88874858 88977207 - AKT2 chr19 40230317 40285536 - RAB1B chr11 66268590 66277492 + PAK4 chr19 39125770 39182816 + DUSP8 chr11 1554051 1572271 - TESMIN chr11 68707440 68751520 - miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0001168 chr20 47691321 47707559 + hsa_circ_0001146 chr20 34241449 34246936 - lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC068768.1 chr12 123262060 123262402 + AC118758.3 chr7 56809214 56848800 - AL049796.1 chr1 93847174 93848939 + AL355075.4 chr14 20343048 20343685 - DSCAM-AS1 chr21 40383083 40385358 + KCNQ1OT1 chr11 2608328 2699994 - LINC01772 chr1 16460948 16468481 + MIR155HG chr21 25561909 25575168 + MIR663AHG chr20 26167817 26251546 - NEAT1 chr11 65422774 65445540 + TUG1 chr22 30969245 30979395 + Display:

Experiment Detail

GEO ID: GSE54010 Sample Source: Urine Source Fraction: Urine Platform: GPL15159 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 1183 Sample treatment protocol: NA RNA Extract protocol: Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA). RNA library preparation protocol: 400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA