exRNAdisease

General Information

Database ID:

exR0730702

RNA Name:

hsa-miR-665

RNA Type:

miRNA

Chromosome:

chr14

Starnd:

Coordinate:

Start Site(bp):

100875075

End Site(bp):

100875094

External Links:

Disease Information

Disease Name:	Prostate Cancer
Disease Category:	Cancers
MeSH ID:	D011471
Type:	Neoplasms/Digestive System Neoplasms
Alias:	Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID:	GSE54010
Description:	miRNA expression profiles in the 19 candidate urines (prostate cancer, CaP, patients and non-cancer subjects with benign prostatic hyperplasia, BPH)
Experimental Design:	Cancer vs Control
Case Disease Type:	Prostate Cancer
Case Disease SubType:	Advanced Prostate Cancer
Case Sample:	Localized Prostate Cancer
Control Sample:	Benign Prostatic Hyperplasia
Number of Case:	7
Number of Control:	5
Number of Samples:	12

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
GINS1	chr20	25407673	25452628	+
TMED10	chr14	75131469	75176612	-
C19orf12	chr19	29698886	29715789	-
STX6	chr1	180972712	181023121	-
CTSD	chr11	1752755	1764573	-
CCNF	chr16	2429394	2458854	+
GREB1	chr2	11482341	11642788	+
IRF4	chr6	391752	411443	+
COX8A	chr11	63974620	63976543	+
ABHD2	chr15	89087459	89202355	+
CLDN11	chr3	170418865	170454733	+
ZNF527	chr19	37371061	37393066	+
ZBTB7A	chr19	4043303	4066899	-
TAF5L	chr1	229593111	229626047	-
CIPC	chr14	77098126	77117287	+
C6orf120	chr6	169702190	169704856	+
HADHA	chr2	26190635	26244672	-
EXOSC6	chr16	70246778	70251940	-
TSPAN4	chr11	842812	867116	+
EHD2	chr19	47713422	47743134	+
KLHDC3	chr6	43014103	43021298	+
CACUL1	chr10	118674167	118755249	-
RBM33	chr7	155644451	155781485	+
GUCD1	chr22	24540423	24555935	-
ELN	chr7	74027789	74069907	+
RHOF	chr12	121777754	121803403	-
VMA21	chrX	151396515	151409364	+
CBFB	chr16	67028984	67101058	+
STX3	chr11	59713456	59805882	+
TNFRSF1B	chr1	12166991	12209228	+

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000417	chr12	69644908	69656342	+
hsa_circ_0000402	chr12	53670403	53671011	+
hsa_circ_0000798	chr17	65941524	65944422	+
hsa_circ_0000943	chr19	47421744	47440665	+
hsa_circ_0001387	chr4	1902352	1936989	+
hsa_circ_0000799	chr17	65941524	65972074	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC005394.2	chr19	28435388	28727680	-
AC018521.1	chr17	47945424	47981736	+
AC023509.1	chr12	53441741	53467528	+
AC118758.3	chr7	56809214	56848800	-
AC234582.1	chr1	155195004	155205495	+
AL355987.4	chr9	136799223	136810042	+
ARHGAP27P1-BPTFP1-KPNA2P3	chr17	64749663	64781707	-
LINC00665	chr19	36313067	36331770	-
LINC00910	chr17	43338741	43389199	-
LINC01089	chr12	121795267	121803906	-
LINC01535	chr19	37251885	37265535	+
MIR29B2CHG	chr1	207801518	207879115	-
MIR497HG	chr17	7015818	7019659	-
NEAT1	chr11	65422774	65445540	+
OIP5-AS1	chr15	41283990	41309737	+
SND1-IT1	chr7	127997597	128000077	+
SNHG16	chr17	76557764	76565348	+
STAG3L5P-PVRIG2P-PILRB	chr7	100336104	100367831	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE54010
Sample Source:	Urine
Source Fraction:	Urine
Platform:	GPL15159
Method:	Microarray
Num of detected RNA Type:	1
Num of detected RNAs of this Type:	1183
Sample treatment protocol:	NA
RNA Extract protocol:	Total RNA was extracted using RecoverAllTM Total Nucleic Acid Isolation kit (Life Technologies, Carlsbad, CA).
RNA library preparation protocol:	400 ng of total RNA was labeled with cyanine 3-pCp using the Agilent miRNA Complete Labeling kit and hybridized to the array according to the manufacturer's protocol.

Reference