exRNAdisease

Entry Detail

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General Information

Database ID: exR0756272 RNA Name: BSG RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 571277 End Site(bp): 583493 External Links: ENSG00000172270

Disease Information

Disease Name: Glioblastoma Multiforme Disease Category: Cancers MeSH ID: D005909 Type: Neoplasms/Neoplasms, Glandular and Epithelial Alias: Glioblastoma//Glioblastomas//Astrocytoma, Grade IV//Astrocytomas, Grade IV//Grade IV Astrocytoma//Grade IV Astrocytomas//Glioblastoma Multiforme//Giant Cell Glioblastoma//Giant Cell Glioblastomas//Glioblastoma, Giant Cell//Glioblastomas, Giant Cell

Expression Detail

GEO ID: GSE106804 Description: Engineered Nanointerfaces for Microfluidic Isolation and Molecular Profiling of Tumor-specific Extracellular Vesicles Experimental Design: Cancer vs Control Case Disease Type: Glioblastoma Multiforme Case Disease SubType: NA Case Sample: Glioblastoma Multiforme Control Sample: Healthy Number of Case: 13 Number of Control: 6 Number of Samples: 19

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCC1 chr16 15949577 16143074 + ABCC5 chr3 183919934 184017939 - ABCF1 chr6 30571393 30597179 + AC005258.1 chr19 2269525 2341172 + AC010422.3 chr19 12643831 12648397 - AC011005.1 chr7 129126518 129130793 + AC012531.3 chr12 53985845 54034888 + AC058822.1 chr4 53377839 54295272 + AC104109.3 chr5 134167170 134226071 - AC245033.1 chr15 82536788 82573194 - ACBD4 chr17 45132600 45144181 + ACO2 chr22 41469117 41528989 + ACTB chr7 5527148 5563784 - ACVR2B chr3 38453890 38493142 + ADH5 chr4 99070978 99088801 - ADPRHL2 chr1 36088892 36093932 + ADRA1D chr20 4220630 4249287 - AGAP3 chr7 151085831 151144436 + AGAP4 chr10 45825594 45853875 - AGFG1 chr2 227472152 227561214 + AGPAT4 chr6 161129967 161274061 - AHCY chr20 34280268 34311802 - AHNAK chr11 62433542 62556235 - AKAP17A chrX 1591604 1602520 + AKT1 chr14 104769349 104795751 - AL133352.1 chr10 100505628 100529881 - AL139353.1 chr14 31334312 31457441 - ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-664b-5p chrX 154768596 154768619 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007161.3 chr7 7640752 8004053 + AC007952.4 chr17 19112000 19112636 - AC012531.2 chr12 54017110 54035361 + AC124068.2 chr15 89335053 89336161 + AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL035458.2 chr20 34234840 34281173 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 29330365 Title: Engineered nanointerfaces for microfluidic isolation and molecular profiling of tumor-specific extracellular vesicles. Author: Re¨¢tegui E, van der Vos KE, Lai CP, Zeinali M, Atai NA, Aldikacti B, Floyd FP Jr, H Khankhel A, Thapar V, Hochberg FH, Sequist LV, Nahed BV, S Carter B, Toner M, Balaj L, T Ting D, Breakefield XO, Stott SL. Journal: Nat Commun. 2018 Jan 12;9(1):175. Description: Tumor-derived EVs have the potential to be utilized as disease-specific biomarkers, and genes specific to GBM as well as transcripts that are hallmarks for the four genetic subtypes of the disease.