exRNAdisease

Entry Detail

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General Information

Database ID: exR0757399 RNA Name: CSDE1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 114716913 End Site(bp): 114758676 External Links: ENSG00000009307

Disease Information

Disease Name: Glioblastoma Multiforme Disease Category: Cancers MeSH ID: D005909 Type: Neoplasms/Neoplasms, Glandular and Epithelial Alias: Glioblastoma//Glioblastomas//Astrocytoma, Grade IV//Astrocytomas, Grade IV//Grade IV Astrocytoma//Grade IV Astrocytomas//Glioblastoma Multiforme//Giant Cell Glioblastoma//Giant Cell Glioblastomas//Glioblastoma, Giant Cell//Glioblastomas, Giant Cell

Expression Detail

GEO ID: GSE106804 Description: Engineered Nanointerfaces for Microfluidic Isolation and Molecular Profiling of Tumor-specific Extracellular Vesicles Experimental Design: Cancer vs Control Case Disease Type: Glioblastoma Multiforme Case Disease SubType: NA Case Sample: Glioblastoma Multiforme Control Sample: Healthy Number of Case: 13 Number of Control: 6 Number of Samples: 19

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AASS chr7 122073549 122144255 - ABCE1 chr4 145098288 145129524 + ABHD4 chr14 22598237 22613215 + ABRAXAS1 chr4 83459517 83523348 - AC007192.1 chr19 18153158 18178117 + AC008982.1 chr19 38817471 38840178 - AC010463.1 chr19 17267418 17282966 + AC012254.2 chr18 47108188 47176345 - AC040162.1 chr16 67929614 67936017 - AC073508.2 chr17 40627356 40665141 - ACOT8 chr20 45841721 45857405 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ACTR1A chr10 102461881 102502712 - ACTR2 chr2 65227753 65271253 + ADAM11 chr17 44758988 44781846 + AEN chr15 88621337 88632281 + AFG3L2 chr18 12328944 12377227 - AHCY chr20 34280268 34311802 - AKAP17A chrX 1591604 1602520 + AKIRIN1 chr1 38991276 39006059 + AL121594.1 chr14 35122549 35317474 + AL136295.1 chr14 24189157 24213473 - ALDH18A1 chr10 95605941 95656711 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC012236.1 chr15 31221999 31230838 - AC016876.2 chr17 7581964 7584086 - AC245014.3 chr1 145281116 145281462 + AL022311.1 chr22 37876148 37895563 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 29330365 Title: Engineered nanointerfaces for microfluidic isolation and molecular profiling of tumor-specific extracellular vesicles. Author: Re¨¢tegui E, van der Vos KE, Lai CP, Zeinali M, Atai NA, Aldikacti B, Floyd FP Jr, H Khankhel A, Thapar V, Hochberg FH, Sequist LV, Nahed BV, S Carter B, Toner M, Balaj L, T Ting D, Breakefield XO, Stott SL. Journal: Nat Commun. 2018 Jan 12;9(1):175. Description: Tumor-derived EVs have the potential to be utilized as disease-specific biomarkers, and genes specific to GBM as well as transcripts that are hallmarks for the four genetic subtypes of the disease.