Entry Detail



General Information

Database ID:exR0766212
RNA Name:AC008040.1
RNA Type:lncRNA
Chromosome:chr3
Starnd:-
Coordinate:
Start Site(bp):169939353End Site(bp):169966734
External Links:ENSG00000239219



Disease Information

Disease Name:Lung Cancer
Disease Category:Cancers
MeSH ID:D008175
Type:Neoplasms/Respiratory Tract Neoplasms
Alias:Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung



Expression Detail

GEO ID:GSE69732
Description:Circulating RNAs profile in non-small cell lung cancer patients
Experimental Design:Cancer vs Control
Case Disease Type:Lung Cancer
Case Disease SubType:Non-Small Cell Lung Cancer
Case Sample:Non-Small Cell Lung Cancer
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
CCNL1
chr3
157146508
157160760
-
COG4
chr16
70480568
70523558
-
DICER1
chr14
95086228
95158010
-
EPHA4
chr2
221418027
221574202
-
FHL1
chrX
136146702
136211359
+
FOXRED2
chr22
36487190
36507101
-
PABPC4
chr1
39560816
39576790
-
RANGAP1
chr22
41245611
41286251
-
SPG11
chr15
44562696
44663678
-
TRIP6
chr7
100867387
100873454
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-214-3p
chr1
172138816
172138837
-
hsa-miR-124-3p
chr8
64379210
64379231
+
hsa-miR-185-5p
chr22
20033153
20033174
+
hsa-miR-367-3p
chr4
112647877
112647898
-
hsa-miR-506-3p
chrX
147230753
147230773
-
hsa-miR-761
chr1
51836375
51836396
-
hsa-miR-4306
chr13
99643123
99643139
+
hsa-miR-3619-5p
chr22
46091059
46091080
+
hsa-miR-4644
chr6
170330813
170330835
+
hsa-miR-605-3p
chr10
51299623
51299644
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
LINC01783
chr1
16533886
16536172
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:26417025
Title:Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison.
Author:Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC.
Journal:Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30.
Description:Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.