Entry Detail



General Information

Database ID:exR0766213
RNA Name:AC008543.1
RNA Type:lncRNA
Chromosome:chr19
Starnd:+
Coordinate:
Start Site(bp):11639754End Site(bp):11686569
External Links:ENSG00000197332



Disease Information

Disease Name:Lung Cancer
Disease Category:Cancers
MeSH ID:D008175
Type:Neoplasms/Respiratory Tract Neoplasms
Alias:Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung



Expression Detail

GEO ID:GSE69732
Description:Circulating RNAs profile in non-small cell lung cancer patients
Experimental Design:Cancer vs Control
Case Disease Type:Lung Cancer
Case Disease SubType:Non-Small Cell Lung Cancer
Case Sample:Non-Small Cell Lung Cancer
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008758.1
chr19
12461559
12551474
-
AC008758.5
chr19
12391949
12441082
-
AC008758.6
chr19
12433103
12484816
-
CANT1
chr17
78991716
79009867
-
DDI2
chr1
15617458
15669044
+
NELFB
chr9
137255327
137273542
+
NPEPL1
chr20
58689131
58719238
+
PRKCSH
chr19
11435288
11450968
+
RNF44
chr5
176526712
176538025
-
RSC1A1
chr1
15659869
15661722
+
STX16-NPEPL1
chr20
58651434
58715410
+
USP53
chr4
119212587
119295517
+
ZNF140
chr12
133079838
133107544
+
ZNF426
chr19
9523223
9538645
-
ZNF443
chr19
12429706
12441021
-
ZNF563
chr19
12317477
12333720
-
ZNF606
chr19
57977053
58003349
-
ZNF655
chr7
99558406
99576453
+
ZNF709
chr19
12461184
12513854
-
ZNF823
chr19
11721265
11739009
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008758.4
chr19
12379189
12401274
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:26417025
Title:Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison.
Author:Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC.
Journal:Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30.
Description:Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.