exRNAdisease

Entry Detail

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General Information

Database ID: exR0766219 RNA Name: AC016876.2 RNA Type: lncRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 7581964 End Site(bp): 7584086 External Links: ENSG00000233223

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand TRAF4 chr17 28744005 28750956 + HSPD1 chr2 197486584 197516737 - SETD5 chr3 9397615 9479240 + MT-ND4L chrMT 10470 10766 + ARF6 chr14 49893082 49897054 + HOXB13 chr17 48724763 48729178 - KLHL29 chr2 23385179 23708611 + HSP90B1 chr12 103930107 103953645 + UBALD1 chr16 4608883 4615027 - USP14 chr18 158383 214629 + YBX1 chr1 42682418 42703805 + SEC61A1 chr3 128051641 128071683 + AC048338.1 chr12 122207779 122266423 - CDK1 chr10 60778331 60794852 + KLF15 chr3 126342635 126357408 - NT5DC2 chr3 52524385 52535054 - EXOSC2 chr9 130693721 130704894 + MT-ND1 chrMT 3307 4262 + PSMG1 chr21 39174769 39183488 - ZYX chr7 143381295 143391111 + RAB15 chr14 64945814 64973226 - CWF19L1 chr10 100232298 100267680 - KIAA1191 chr5 176346062 176361807 - HMGA2 chr12 65824131 65966295 + GADD45GIP1 chr19 12953119 12957223 - TPT1 chr13 45333471 45341370 - RPL15 chr3 23916545 23924374 + IFT80 chr3 160256986 160399880 - DIS3L chr15 66293217 66333898 + TUBA1B chr12 49127782 49131397 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-320d chr13 40727828 40727846 - hsa-miR-296-5p chr20 58817661 58817681 - hsa-miR-331-3p chr12 95308480 95308500 + hsa-miR-326 chr11 75335108 75335127 - hsa-miR-320c chr18 24321716 24321735 + hsa-miR-491-5p chr9 20716120 20716141 + hsa-miR-3142 chr5 160474450 160474471 + hsa-miR-3150a-3p chr8 95072962 95072983 + hsa-miR-542-3p chrX 134541364 134541385 - hsa-miR-6866-3p chr17 40161980 40162001 + hsa-miR-761 chr1 51836375 51836396 - hsa-miR-5195-3p chr14 106850910 106850930 - hsa-miR-2114-5p chrX 150228016 150228037 + hsa-miR-2467-3p chr2 239351732 239351753 - hsa-miR-3064-5p chr17 64500817 64500837 - hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-1286 chr22 20249145 20249165 - hsa-miR-4436a chr2 88812425 88812445 + hsa-miR-6884-5p chr17 40026383 40026404 - hsa-miR-642a-5p chr19 45674943 45674964 + hsa-miR-493-3p chr14 100869116 100869137 + hsa-miR-1245b-5p chr2 188978133 188978153 - hsa-miR-31-5p chr9 21512158 21512178 - hsa-miR-605-3p chr10 51299623 51299644 + hsa-miR-330-5p chr19 45639049 45639070 - hsa-miR-485-3p chr14 101055464 101055485 + hsa-miR-133b chr6 52148988 52149009 + hsa-miR-145-5p chr5 149430661 149430683 + hsa-miR-370-3p chr14 100911186 100911207 + hsa-miR-4640-3p chr6 30890949 30890970 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010542.4 chr16 66549280 66551189 + AC011450.1 chr19 49331525 49340303 - AC064802.1 chr8 114282067 114295839 + AC068831.7 chr15 91022766 91023200 + AC132217.1 chr11 2129121 2129964 - AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + BISPR chr19 17405686 17419324 + DANCR chr4 52712404 52720351 + EIF1B-AS1 chr3 40061110 40309698 - EPB41L4A-AS1 chr5 112160526 112164818 + ESRG chr3 54632122 54639857 - GAS5 chr1 173858559 173868882 - LINC00324 chr17 8220642 8224043 - MIR4435-2HG chr2 111006015 111523376 - MIRLET7BHG chr22 46053869 46113928 + RMRP chr9 35657751 35658018 - SNHG4 chr5 139274102 139284899 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.