Entry Detail



General Information

Database ID:exR0766237
RNA Name:AC106864.1
RNA Type:lncRNA
Chromosome:chr4
Starnd:-
Coordinate:
Start Site(bp):112693047End Site(bp):112706810
External Links:ENSG00000250046



Disease Information

Disease Name:Lung Cancer
Disease Category:Cancers
MeSH ID:D008175
Type:Neoplasms/Respiratory Tract Neoplasms
Alias:Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung



Expression Detail

GEO ID:GSE69732
Description:Circulating RNAs profile in non-small cell lung cancer patients
Experimental Design:Cancer vs Control
Case Disease Type:Lung Cancer
Case Disease SubType:Non-Small Cell Lung Cancer
Case Sample:Non-Small Cell Lung Cancer
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ZNF532
chr18
58862600
58986480
+
GNAS
chr20
58839718
58911192
+
RPS27A
chr2
55231903
55235853
+
CSNK2A1
chr20
472498
543835
-
TJP2
chr9
69121264
69274615
+
WDR59
chr16
74871362
75000173
-
SMC5
chr9
70258978
70354873
+
HSPA8
chr11
123057489
123063230
-
SRSF7
chr2
38743599
38751494
-
RRN3
chr16
15060022
15094317
-
NECTIN3
chr3
111070071
111275563
+
MERTK
chr2
111898607
112029561
+
WAC
chr10
28532493
28623112
+
CHD6
chr20
41402083
41618384
-
NDUFB2
chr7
140690777
140722790
+
SREBF2
chr22
41833079
41907307
+
ZNF721
chr4
425815
499156
-
XPO1
chr2
61477849
61538626
-
FASN
chr17
82078338
82098294
-
KANSL1L
chr2
210021421
210171409
-
TPI1
chr12
6867119
6870948
+
AC073896.1
chr12
56285916
56316059
-
CNPY2
chr12
56309842
56316119
-
EXOC4
chr7
133253073
134066589
+
ACSL4
chrX
109624244
109733403
-
ITM2C
chr2
230864639
230879248
+
PNN
chr14
39175183
39183220
+
NCL
chr2
231453531
231483641
-
TACO1
chr17
63600882
63608365
+
MTMR12
chr5
32226994
32312987
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-302c-5p
chr4
112648402
112648423
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC023509.1
chr12
53441741
53467528
+
AC113189.2
chr17
7420103
7444081
+
AC113189.4
chr17
7439506
7445966
+
AL139819.1
chr10
100335563
100346390
-
CCDC144NL-AS1
chr17
20868433
21002276
+
CCND2-AS1
chr12
4247981
4276252
-
MIR205HG
chr1
209428817
209432838
+
OIP5-AS1
chr15
41283990
41309737
+
RMST
chr12
97430884
97598415
+
SNHG17
chr20
38419638
38435409
-
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:26417025
Title:Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison.
Author:Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC.
Journal:Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30.
Description:Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.