Entry Detail



General Information

Database ID:exR0766250
RNA Name:AGAP11
RNA Type:lncRNA
Chromosome:chr10
Starnd:+
Coordinate:
Start Site(bp):86970741End Site(bp):87010126
External Links:ENSG00000271880



Disease Information

Disease Name:Lung Cancer
Disease Category:Cancers
MeSH ID:D008175
Type:Neoplasms/Respiratory Tract Neoplasms
Alias:Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung



Expression Detail

GEO ID:GSE69732
Description:Circulating RNAs profile in non-small cell lung cancer patients
Experimental Design:Cancer vs Control
Case Disease Type:Lung Cancer
Case Disease SubType:Non-Small Cell Lung Cancer
Case Sample:Non-Small Cell Lung Cancer
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AGAP1
chr2
235494043
236131800
+
AGAP4
chr10
45825594
45853875
-
AGAP5
chr10
73674285
73698159
-
AGAP9
chr10
47501854
47523638
-
ANKRD52
chr12
56237807
56258384
-
ASXL1
chr20
32358330
32439319
+
BMS1
chr10
42782795
42834937
+
CHTF8
chr16
69118010
69132578
-
FZD9
chr7
73433778
73436120
+
HNRNPA1
chr12
54280193
54287088
+
KPTN
chr19
47475150
47484265
-
PGPEP1
chr19
18340598
18369950
+
PIGS
chr17
28553383
28571794
-
PRRC2A
chr6
31620715
31637771
+
RARS2
chr6
87513938
87589987
-
RCOR1
chr14
102592649
102730561
+
SEMA3C
chr7
80742538
80922359
-
TNPO2
chr19
12699194
12724011
-
TPM2
chr9
35681992
35690056
-
WDR73
chr15
84639281
84654343
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC022400.3
chr10
73674295
73730466
-
AL136982.1
chr10
86992406
87010203
+
AL512662.2
chr10
79904898
79951029
+
SNHG11
chr20
38446343
38450940
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:26417025
Title:Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison.
Author:Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC.
Journal:Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30.
Description:Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.