exRNAdisease

Entry Detail

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General Information

Database ID: exR0766259 RNA Name: AL132655.2 RNA Type: lncRNA Chromosome: chr20 Starnd: - Coordinate: Start Site(bp): 58817132 End Site(bp): 58817725 External Links: ENSG00000268649

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACLY chr17 41866917 41930542 - EEF1B2 chr2 206159585 206162928 + EEF2 chr19 3976056 3985463 - GNL1 chr6 30541377 30557174 - IDH3B chr20 2658395 2664219 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-296-5p chr20 58817661 58817681 - hsa-miR-483-3p chr11 2134142 2134162 - hsa-miR-485-5p chr14 101055427 101055448 + hsa-miR-129-1-3p chr7 128207920 128207941 + hsa-miR-129-2-3p chr11 43581450 43581471 + hsa-miR-532-3p chrX 50003204 50003225 + hsa-miR-2114-3p chrX 150228052 150228072 + hsa-miR-1306-5p chr22 20086072 20086093 + hsa-miR-6823-3p chr3 48549961 48549981 - hsa-miR-6884-5p chr17 40026383 40026404 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.