exRNAdisease

Entry Detail

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General Information

Database ID: exR0766268 RNA Name: AL356488.2 RNA Type: lncRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 109100193 End Site(bp): 109100619 External Links: ENSG00000270066

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC048338.1 chr12 122207779 122266423 - ACTB chr7 5527148 5563784 - AGAP3 chr7 151085831 151144436 + AC027796.3 chr17 3585149 3636249 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-296-5p chr20 58817661 58817681 - hsa-miR-377-3p chr14 101062094 101062115 + hsa-miR-342-3p chr14 100109715 100109737 + hsa-miR-520g-3p chr19 53722220 53722243 + hsa-miR-520h chr19 53742566 53742587 + hsa-miR-663a chr20 26208243 26208264 - hsa-miR-654-5p chr14 101040234 101040255 + hsa-miR-140-3p chr16 69933142 69933162 + hsa-miR-339-3p chr7 1022955 1022977 - hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-541-3p chr14 101064548 101064569 + hsa-miR-744-5p chr17 12081909 12081930 + hsa-miR-1908-5p chr11 61815209 61815229 - hsa-miR-2115-3p chr3 48316381 48316402 - hsa-miR-3184-5p chr17 30117128 30117151 - hsa-miR-3918 chr6 158764715 158764735 - hsa-miR-3150b-3p chr8 95072924 95072944 - hsa-miR-3940-3p chr19 6416434 6416455 - hsa-miR-4640-5p chr6 30890891 30890913 + hsa-miR-4726-5p chr17 38719691 38719713 + hsa-miR-4731-5p chr17 15251666 15251687 - hsa-miR-4784 chr2 131491208 131491227 - hsa-miR-5094 chr15 89850690 89850711 - hsa-miR-6787-5p chr17 82236673 82236694 + hsa-miR-3609 chr7 98881700 98881723 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC067930.1 chr8 143579636 143580670 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.