exRNAdisease

Entry Detail

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General Information

Database ID: exR0766365 RNA Name: EPB41L4A-AS1 RNA Type: lncRNA Chromosome: chr5 Starnd: + Coordinate: Start Site(bp): 112160526 End Site(bp): 112164818 External Links: ENSG00000224032

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007192.1 chr19 18153158 18178117 + AC120057.2 chr17 7240427 7244635 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - AGRN chr1 1020120 1056118 + AC118553.2 chr1 99970011 100083321 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-17-5p chr13 91350618 91350640 + hsa-miR-20a-5p chr13 91351072 91351094 + hsa-miR-93-5p chr7 100093815 100093837 - hsa-miR-105-5p chrX 152394458 152394480 - hsa-miR-106a-5p chrX 134170244 134170266 - hsa-miR-214-3p chr1 172138816 172138837 - hsa-miR-142-5p chr17 58331283 58331303 - hsa-miR-106b-5p chr7 100094043 100094063 - hsa-miR-20b-5p chrX 134169850 134169872 - hsa-miR-519c-3p chr19 53686522 53686543 + hsa-miR-526b-3p chr19 53694443 53694464 + hsa-miR-519b-3p chr19 53695263 53695284 + hsa-miR-519d-3p chr19 53713400 53713421 + hsa-miR-520g-3p chr19 53722220 53722243 + hsa-miR-520h chr19 53742566 53742587 + hsa-miR-519a-3p chr19 53762397 53762418 + hsa-miR-761 chr1 51836375 51836396 - hsa-miR-3619-5p chr22 46091059 46091080 + hsa-miR-5590-3p chr2 134857853 134857873 + hsa-miR-1277-5p chrX 118386401 118386424 + hsa-miR-511-3p chr10 17845160 17845179 + hsa-miR-7853-5p chr6 6169380 6169400 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.