exRNAdisease

Entry Detail

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General Information

Database ID: exR0766602 RNA Name: SNHG25 RNA Type: lncRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 64145970 End Site(bp): 64146476 External Links: ENSG00000266402

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMP chr2 218264123 218270257 - ACTG1 chr17 81509971 81523847 - ADSL chr22 40346500 40390463 + AL022238.4 chr22 40346529 40410054 + AKIRIN2 chr6 87674860 87702233 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-15a-5p chr13 50049167 50049188 - hsa-miR-16-5p chr3 160404754 160404775 + hsa-miR-15b-5p chr3 160404607 160404628 + hsa-miR-195-5p chr17 7017667 7017687 - hsa-miR-330-3p chr19 45639009 45639031 - hsa-miR-424-5p chrX 134546680 134546701 - hsa-miR-329-3p chr14 101026834 101026855 + hsa-miR-489-3p chr7 93483947 93483968 - hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-663a chr20 26208243 26208264 - hsa-miR-296-3p chr20 58817626 58817647 - hsa-miR-362-3p chrX 50009005 50009026 + hsa-miR-1251-5p chr12 97491913 97491933 + hsa-miR-1307-3p chr10 103394301 103394322 - hsa-miR-1908-5p chr11 61815209 61815229 - hsa-miR-579-5p chr5 32394430 32394451 - hsa-miR-6787-5p chr17 82236673 82236694 + hsa-miR-6838-5p chr7 44073407 44073428 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.