exRNAdisease

Entry Detail

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General Information

Database ID: exR0766615 RNA Name: STAG3L5P-PVRIG2P-PILRB RNA Type: lncRNA Chromosome: chr7 Starnd: + Coordinate: Start Site(bp): 100336104 End Site(bp): 100367831 External Links: ENSG00000272752

Disease Information

Disease Name: Lung Cancer Disease Category: Cancers MeSH ID: D008175 Type: Neoplasms/Respiratory Tract Neoplasms Alias: Lung Neoplasms//Pulmonary Neoplasms//Neoplasms, Lung//Lung Neoplasm//Neoplasm, Lung//Neoplasms, Pulmonary//Neoplasm, Pulmonary//Pulmonary Neoplasm//Lung Cancer//Cancer, Lung//Cancers, Lung//Lung Cancers//Pulmonary Cancer//Cancer, Pulmonary//Cancers, Pulmonary//Pulmonary Cancers//Cancer of the Lung//Cancer of Lung

Expression Detail

GEO ID: GSE69732 Description: Circulating RNAs profile in non-small cell lung cancer patients Experimental Design: Cancer vs Control Case Disease Type: Lung Cancer Case Disease SubType: Non-Small Cell Lung Cancer Case Sample: Non-Small Cell Lung Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC026464.4 chr16 69299682 69322700 + ACADVL chr17 7217125 7225266 + AIMP2 chr7 6009255 6023834 + AKT1S1 chr19 49869033 49878459 - AC138969.1 chr16 16317444 16350590 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-510-5p chrX 147272378 147272399 - hsa-miR-519b-3p chr19 53695263 53695284 + hsa-miR-377-3p chr14 101062094 101062115 + hsa-miR-214-3p chr1 172138816 172138837 - hsa-miR-103a-3p chr5 168560904 168560926 - hsa-miR-3150a-3p chr8 95072962 95072983 + hsa-miR-195-5p chr17 7017667 7017687 - hsa-miR-551b-3p chr3 168551914 168551934 + hsa-miR-23c chrX 20017101 20017122 - hsa-miR-138-5p chr16 56858527 56858549 + hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-362-3p chrX 50009005 50009026 + hsa-miR-424-5p chrX 134546680 134546701 - hsa-miR-4784 chr2 131491208 131491227 - hsa-miR-551a chr1 3560710 3560730 - hsa-miR-6763-5p chr12 132582002 132582020 + hsa-miR-130a-5p chr11 57641212 57641233 + hsa-miR-3150b-3p chr8 95072924 95072944 - hsa-miR-423-5p chr17 30117095 30117117 + hsa-miR-761 chr1 51836375 51836396 - hsa-miR-16-5p chr3 160404754 160404775 + hsa-miR-23a-3p chr19 13836595 13836615 - hsa-miR-15b-5p chr3 160404607 160404628 + hsa-miR-296-5p chr20 58817661 58817681 - hsa-miR-875-5p chr8 99536830 99536851 - hsa-miR-329-3p chr14 101026834 101026855 + hsa-miR-519a-3p chr19 53762397 53762418 + hsa-miR-519c-3p chr19 53686522 53686543 + hsa-miR-541-3p chr14 101064548 101064569 + hsa-miR-188-5p chrX 50003517 50003537 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26417025 Title: Circulating Messenger RNA Profiling with Microarray and Next-generation Sequencing: Cross-platform Comparison. Author: Shih CL, Luo JD, Chang JW, Chen TL, Chien YT, Yu CJ, Chiou CC. Journal: Cancer Genomics Proteomics. 2015 Sep-Oct;12(5):223-30. Description: Genes with higher expression levels have cross-platform concordance and can be potential biomarkers.