exRNAdisease

Entry Detail

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General Information

Database ID: exR0783434 RNA Name: AC002116.1 RNA Type: lncRNA Chromosome: chr19 Starnd: - Coordinate: Start Site(bp): 36008638 End Site(bp): 36014235 External Links: ENSG00000248101

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ARF3 chr12 48935723 48957487 - AGO3 chr1 35930718 36072500 + PGD chr1 10398592 10420511 + SYNE4 chr19 36003307 36008813 - ATG4B chr2 241637213 241673857 + PHB2 chr12 6965327 6970753 - NSMF chr9 137447573 137459334 - RPS15 chr19 1438358 1440494 + DHRS11 chr17 36591879 36600804 + RPL13 chr16 89560657 89566828 + RNF114 chr20 49936336 49953885 + SNX19 chr11 130875436 130916509 - TAF6 chr7 100107070 100119841 - MDN1 chr6 89642498 89819794 - GPAA1 chr8 144082590 144086216 + INTU chr4 127623271 127726737 + YIPF2 chr19 10922185 10928681 - TRIM27 chr6 28903002 28923988 - HCFC1 chrX 153947557 153971818 - MRPL28 chr16 366969 371289 - MCU chr10 72692131 72887694 + EEF2 chr19 3976056 3985463 - PDCD11 chr10 103396626 103446294 + TUBA1A chr12 49184795 49189080 - BRD9 chr5 850291 892801 - STARD10 chr11 72754729 72793681 - GPR153 chr1 6247353 6261098 - SAMD4B chr19 39342396 39385710 + EIF2AK4 chr15 39934115 40035591 + SPHK2 chr19 48619291 48630717 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-490-3p chr7 136903242 136903263 + hsa-miR-744-5p chr17 12081909 12081930 + hsa-miR-873-5p chr9 28888925 28888945 - hsa-miR-1914-3p chr20 63941474 63941495 - hsa-miR-761 chr1 51836375 51836396 - hsa-miR-3186-3p chr17 81451116 81451136 - hsa-miR-3619-5p chr22 46091059 46091080 + hsa-miR-5194 chr8 130008360 130008381 - hsa-miR-6738-5p chr1 155951309 155951331 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.