exRNAdisease

Entry Detail

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General Information

Database ID: exR0783437 RNA Name: AC004687.1 RNA Type: lncRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 58330884 End Site(bp): 58332508 External Links: ENSG00000265206

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CCDC126 chr7 23597382 23644708 + ENO1 chr1 8861000 8879190 - VPS53 chr17 508668 721717 - ZMIZ2 chr7 44748581 44769881 + NME4 chr16 396725 410367 + MCM7 chr7 100092728 100101940 - RPL27 chr17 42998273 43002959 + GRINA chr8 143990056 143993415 + AP002990.1 chr11 62559603 62591531 - RPS14 chr5 150442635 150449739 - MAST2 chr1 45786987 46036122 + ACTB chr7 5527148 5563784 - MRPL18 chr6 159789812 159798436 + CCL3 chr17 36088256 36090169 - MBD3 chr19 1573596 1592865 - MT-ATP6 chrMT 8527 9207 + TUBB chr6 30720352 30725426 + SMAD4 chr18 51028394 51085045 + TPI1 chr12 6867119 6870948 + B2M chr15 44711487 44718877 + CFL1 chr11 65823022 65862026 - PDE4A chr19 10416773 10469630 + TMSB4X chrX 12975110 12977227 + C6orf223 chr6 44000580 44007612 + NDE1 chr16 15643267 15726353 + TSC22D4 chr7 100463359 100479232 - EEF1G chr11 62559596 62574086 - EIF1 chr17 41688885 41692668 + MT-ATP8 chrMT 8366 8572 + SMAP2 chr1 40344850 40423326 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-101-3p chr1 65058442 65058462 - hsa-miR-142-5p chr17 58331283 58331303 - hsa-miR-142-3p chr17 58331245 58331267 - hsa-miR-134-5p chr14 101054694 101054715 + hsa-miR-512-3p chr19 53666729 53666750 + hsa-miR-520f-3p chr19 53682213 53682234 + hsa-miR-3118 chr15 21843793 21843815 + hsa-miR-5590-3p chr2 134857853 134857873 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC138761.1 chr17 22266395 22288301 + AP001496.2 chr18 5232876 5238526 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.