exRNAdisease

Entry Detail

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General Information

Database ID: exR0783440 RNA Name: AC004951.4 RNA Type: lncRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 43951910 End Site(bp): 44019151 External Links: ENSG00000273432

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC093668.1 chr7 102541501 102592444 - AC105052.1 chr7 102582523 102642869 - AC105052.3 chr7 102637049 102671641 - ATG2B chr14 96279195 96363341 - CAPZB chr1 19338775 19485539 - CBS chr21 43053191 43076943 - CBSL chr21 6444869 6468040 - COTL1 chr16 84565596 84618078 - EIF3B chr7 2354086 2380745 + FMNL1 chr17 45221444 45247319 + KDELR2 chr7 6445953 6484190 - KMT2C chr7 152134922 152436005 - MPP3 chr17 43800799 43833170 - PMS2 chr7 5970925 6009106 - POLR2J chr7 102473118 102478907 - POLR2J2 chr7 102665368 102671629 - POLR2J3 chr7 102562133 102572583 - POM121C chr7 75416786 75486299 - RASA4 chr7 102573807 102616757 - RASA4B chr7 102482445 102517781 - RPLP1 chr15 69452814 69456205 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-199a-5p chr1 172144592 172144614 - hsa-miR-147a chr9 120244985 120245004 - hsa-miR-199b-5p chr9 128244783 128244805 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009292.2 chr15 67832725 67873866 + DTX2P1-UPK3BP1-PMS2P11 chr7 76959835 77043775 + NAALADL2-AS2 chr3 175234861 175271096 - POLR2J4 chr7 43940895 44019175 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.