exRNAdisease

Entry Detail

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General Information

Database ID: exR0783451 RNA Name: AC006064.5 RNA Type: lncRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 6510275 End Site(bp): 6510522 External Links: ENSG00000276232

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADIPOR1 chr1 202940826 202958572 - CHST12 chr7 2403588 2448484 + CLEC2D chr12 9664969 9699553 + CPSF4 chr7 99438922 99457373 + DBF4B chr17 44708608 44752264 + DHCR24 chr1 54849627 54887195 - DXO chr6 31969810 31972290 - EIF4A1 chr17 7572706 7579006 + HMGB2 chr4 173331376 173334432 - LAS1L chrX 65512582 65534775 - LCP1 chr13 46125920 46211871 - MED12 chrX 71118556 71142454 + MT-CO2 chrMT 7586 8269 + PANK3 chr5 168548495 168579368 - PEX10 chr1 2403964 2413797 - PHB2 chr12 6965327 6970753 - POLR2J chr7 102473118 102478907 - PTCH2 chr1 44819844 44843253 - PTMS chr12 6765516 6770952 + RPL18 chr19 48615328 48619184 - RPSA chr3 39406716 39412542 + RRP15 chr1 218285293 218337983 + SAFB chr19 5623035 5668478 + TARBP1 chr1 234391313 234479179 - UBAP2L chr1 154220179 154271510 + UBB chr17 16380798 16382745 + USP22 chr17 20999596 21043760 - WDR74 chr11 62832342 62841809 - ZNF277 chr7 112206695 112343934 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-let-7a-5p chr9 94175962 94175983 + hsa-let-7b-5p chr22 46113691 46113712 + hsa-let-7c-5p chr21 16539838 16539859 + hsa-let-7d-5p chr9 94178841 94178862 + hsa-let-7e-5p chr19 51692793 51692814 + hsa-let-7f-5p chrX 53557246 53557267 - hsa-miR-98-5p chrX 53556299 53556320 - hsa-let-7g-5p chr3 52268336 52268357 - hsa-let-7i-5p chr12 62603691 62603712 + hsa-miR-145-5p chr5 149430661 149430683 + hsa-miR-328-3p chr16 67202327 67202348 - hsa-miR-874-3p chr5 137647582 137647603 - hsa-miR-3187-3p chr19 813627 813646 + hsa-miR-4458 chr5 8460933 8460951 + hsa-miR-4500 chr13 87618671 87618687 - hsa-miR-5195-3p chr14 106850910 106850930 - hsa-miR-212-5p chr17 2050328 2050350 - hsa-miR-345-3p chr14 100307912 100307933 + hsa-miR-1266-3p chr15 52277131 52277152 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AD000090.1 chr19 35557956 35581954 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.