exRNAdisease

Entry Detail

---



General Information

Database ID: exR0783461 RNA Name: AC007952.4 RNA Type: lncRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 19112000 End Site(bp): 19112636 External Links: ENSG00000262202

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand GIGYF2 chr2 232697299 232860575 + HCFC1 chrX 153947557 153971818 - R3HCC1 chr8 23270120 23296279 + SLX1B chr16 29454501 29458219 + EIF4A1 chr17 7572706 7579006 + AMFR chr16 56361452 56425545 - ISYNA1 chr19 18434388 18438167 - HNRNPA0 chr5 137745651 137754363 - PPP1R10 chr6 30600413 30618612 - TMEM259 chr19 1009648 1021179 - B2M chr15 44711487 44718877 + RPS3 chr11 75399515 75422280 + HDAC6 chrX 48801377 48824982 + PLAT chr8 42174718 42207676 - DDX39B chr6 31530219 31542448 - PCBD1 chr10 70882280 70888565 - SEC61B chr9 99222064 99230615 + PER1 chr17 8140472 8156506 - VPS53 chr17 508668 721717 - ZBTB4 chr17 7459366 7484263 - RPLP0 chr12 120196699 120201235 - PLK1 chr16 23677656 23690367 + KANSL1 chr17 46029916 46225389 - SSRP1 chr11 57325986 57335892 - LMNA chr1 156082573 156140089 + WDR74 chr11 62832342 62841809 - ZNF354B chr5 178859953 178888122 + SLC39A10 chr2 195575977 195737702 + TEX101 chr19 43401496 43418597 + ZNF407 chr18 74597870 75065671 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-324-5p chr17 7223343 7223364 - hsa-miR-335-5p chr7 130496126 130496148 + hsa-miR-574-3p chr4 38868092 38868113 + hsa-miR-642a-5p chr19 45674943 45674964 + hsa-miR-802 chr21 35720732 35720754 + hsa-miR-616-3p chr12 57519183 57519204 - hsa-miR-625-3p chr14 65471153 65471174 + hsa-miR-942-5p chr1 117094655 117094676 + hsa-miR-1252-5p chr12 79419261 79419282 + hsa-miR-670-5p chr11 43559675 43559694 + hsa-miR-323b-3p chr14 101056269 101056290 + hsa-miR-4306 chr13 99643123 99643139 + hsa-miR-3940-3p chr19 6416434 6416455 - hsa-miR-4644 chr6 170330813 170330835 + hsa-miR-4766-5p chr22 40813927 40813947 - hsa-miR-345-3p chr14 100307912 100307933 + hsa-miR-3175 chr15 92904408 92904429 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006064.5 chr12 6510275 6510522 + AC008738.1 chr19 33178056 33178651 + AC010542.4 chr16 66549280 66551189 + AC012485.1 chr2 238231684 238255633 + AC106886.2 chr16 30740667 30751381 + AC138761.1 chr17 22266395 22288301 + AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL355075.4 chr14 20343048 20343685 - BX284668.2 chr1 16870945 16883659 + GAS5 chr1 173858559 173868882 - LENG8-AS1 chr19 54444807 54449045 - LINC00910 chr17 43338741 43389199 - LINC01783 chr1 16533886 16536172 - MALAT1 chr11 65497688 65506516 + NAALADL2-AS2 chr3 175234861 175271096 - POLR2J4 chr7 43940895 44019175 - RALY-AS1 chr20 33980679 33994357 - RMRP chr9 35657751 35658018 - SCARNA9 chr11 93721513 93721865 + SLX1B-SULT1A4 chr16 29455105 29464963 + SNHG1 chr11 62851984 62855953 - SNHG12 chr1 28578538 28583132 - SNHG16 chr17 76557764 76565348 + SNHG8 chr4 118278709 118285316 + U73166.1 chr3 50260303 50263358 + XIST chrX 73820649 73852723 - ZFAS1 chr20 49278178 49299600 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.