exRNAdisease

Entry Detail

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General Information

Database ID: exR0783465 RNA Name: AC008443.1 RNA Type: lncRNA Chromosome: chr5 Starnd: + Coordinate: Start Site(bp): 181246507 End Site(bp): 181272167 External Links: ENSG00000233937

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACTG1 chr17 81509971 81523847 - AHCY chr20 34280268 34311802 - BIN1 chr2 127048027 127107288 - CRTAP chr3 33114014 33147773 + HLA-A chr6 29941260 29945884 + HM13 chr20 31514410 31577923 + KLHDC10 chr7 130070534 130135705 + POMGNT2 chr3 43079232 43106079 - RHBDD3 chr22 29259872 29268209 - SMN1 chr5 70925030 70953942 + ST6GALNAC3 chr1 76074746 76634603 + TBC1D1 chr4 37891084 38139175 + TMEM130 chr7 98846488 98870771 - TMOD2 chr15 51751597 51816363 + XPO4 chr13 20777329 20903048 - ZNF704 chr8 80628451 80874781 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand TRIM52-AS1 chr5 181261169 181272307 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.