exRNAdisease

Entry Detail

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General Information

Database ID: exR0783469 RNA Name: AC008969.1 RNA Type: lncRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 58002061 End Site(bp): 58011232 External Links: ENSG00000176593

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABT1 chr6 26596953 26600739 + AL031708.1 chr16 1632259 1686715 + ANKRD28 chr3 15667236 15859771 - CNOT8 chr5 154857553 154876793 + CRAMP1 chr16 1612337 1677908 + CRK chr17 1420689 1463162 - DNASE2 chr19 12875209 12881466 - HNRNPA1 chr12 54280193 54287088 + KLHL23 chr2 169694488 169776989 + MAPK13 chr6 36127809 36144524 + MT-ND1 chrMT 3307 4262 + N4BP2L2 chr13 32432417 32538885 - OSBPL10 chr3 31657890 32077580 - PCNP chr3 101574180 101594465 + SNRNP48 chr6 7590198 7611967 + TPM4 chr19 16067021 16103002 + TXLNA chr1 32179675 32198285 + USP28 chr11 113797874 113875570 - YWHAE chr17 1344275 1400222 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand RBM15-AS1 chr1 110286375 110339171 - ZNF433-AS1 chr19 11987617 12046275 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.