exRNAdisease

Entry Detail

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General Information

Database ID: exR0783477 RNA Name: AC010542.4 RNA Type: lncRNA Chromosome: chr16 Starnd: + Coordinate: Start Site(bp): 66549280 End Site(bp): 66551189 External Links: ENSG00000261519

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACTB chr7 5527148 5563784 - ARL6IP1 chr16 18791669 18801572 - DLD chr7 107891162 107931730 + EIF4A1 chr17 7572706 7579006 + EIF5A chr17 7306999 7312463 + FAM110A chr20 833715 857463 + FZD4 chr11 86945679 86955395 - GANAB chr11 62624826 62646726 - GDI2 chr10 5765223 5842132 - GFPT1 chr2 69319769 69387254 - GLUL chr1 182381704 182392206 - HNRNPU chr1 244840638 244864560 - ITGA6 chr2 172427354 172506459 + JMJD8 chr16 681670 684528 - LSM14A chr19 34172504 34229515 + MKI67 chr10 128096659 128126423 - MRFAP1 chr4 6640091 6642745 + PAQR5 chr15 69298912 69407780 + PIM3 chr22 49960768 49964072 + PMPCA chr9 136410641 136423761 + PUS1 chr12 131929200 131945896 + RBM15B chr3 51391285 51397908 + RPL13 chr16 89560657 89566828 + RPLP0 chr12 120196699 120201235 - RPS2 chr16 1962058 1964841 - TFAM chr10 58385345 58399220 + TSTD3 chr6 99520693 99589899 + TXNDC16 chr14 52430596 52552522 - WDR1 chr4 10074339 10116949 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-199a-3p chr1 172144554 172144575 - hsa-miR-519c-3p chr19 53686522 53686543 + hsa-miR-519b-3p chr19 53695263 53695284 + hsa-miR-519a-3p chr19 53762397 53762418 + hsa-miR-625-5p chr14 65471116 65471136 + hsa-miR-199b-3p chr9 128244745 128244766 - hsa-miR-3129-5p chr2 189133082 189133103 - hsa-miR-3179 chr16 18411905 18411926 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC016876.2 chr17 7581964 7584086 - AC093249.6 chr16 30697707 30699058 - MALAT1 chr11 65497688 65506516 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.