exRNAdisease

Entry Detail

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General Information

Database ID: exR0783492 RNA Name: AC016747.1 RNA Type: lncRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 61141592 End Site(bp): 61144969 External Links: ENSG00000212978

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand APOL2 chr22 36226209 36239954 - C2orf68 chr2 85605254 85612066 - CENPW chr6 126340174 126348875 + EPS15 chr1 51354263 51519266 - GCN1 chr12 120127202 120194715 - GPSM3 chr6 32190766 32195523 - HPS1 chr10 98416198 98446947 - IGFBP5 chr2 216672105 216695549 - KRAS chr12 25205246 25250936 - MRPL37 chr1 54184041 54225464 + NOL8 chr9 92297358 92325636 - PHKB chr16 47461123 47701523 + PLK4 chr4 127880893 127899224 + RPL13 chr16 89560657 89566828 + RPL28 chr19 55385345 55403250 + RUBCN chr3 197668867 197749727 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.