exRNAdisease

Entry Detail

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General Information

Database ID: exR0783531 RNA Name: AC079781.5 RNA Type: lncRNA Chromosome: chr7 Starnd: - Coordinate: Start Site(bp): 97851688 End Site(bp): 97972985 External Links: ENSG00000284707

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RNMT chr18 13726660 13764558 + CHMP2B chr3 87227271 87255556 + TSGA10 chr2 98997261 99154964 - MTRNR2L8 chr11 10507894 10509186 - AL513165.2 chr9 37512547 37592469 - AUP1 chr2 74526645 74529760 - CDK13 chr7 39950121 40099580 + MACROD1 chr11 63998558 64166113 - CAPG chr2 85394753 85418432 - PGK1 chrX 77910739 78129295 + TOMM5 chr9 37582646 37592604 - CBLC chr19 44777869 44800652 + BCAP31 chrX 153700492 153724565 - PHF5A chr22 41459717 41468692 - ACO2 chr22 41469117 41528989 + SMARCB1 chr22 23786931 23838008 + PABPC3 chr13 25095868 25099254 + USP44 chr12 95516560 95551476 - FOXN2 chr2 48314637 48379295 + ATP5MC2 chr12 53632726 53677408 - CARM1 chr19 10871513 10923070 + EIF3L chr22 37848868 37889407 + SNX12 chrX 71056332 71073426 - FAM3A chrX 154506159 154516242 - PPP2R1A chr19 52190048 52229518 + PMAIP1 chr18 59899948 59904306 + ICE1 chr5 5420664 5490220 + YAP1 chr11 102110447 102233424 + UCP2 chr11 73974672 73983246 - TPI1 chr12 6867119 6870948 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4524a-5p chr17 69099606 69099627 - hsa-miR-516b-5p chr19 53736860 53736881 + hsa-miR-195-5p chr17 7017667 7017687 - hsa-miR-5581-3p chr1 37500935 37500956 - hsa-miR-525-5p chr19 53697547 53697567 + hsa-miR-3614-5p chr17 56891319 56891341 - hsa-miR-873-5p chr9 28888925 28888945 - hsa-miR-520a-5p chr19 53690895 53690915 + hsa-miR-3121-3p chr1 180438323 180438344 - hsa-miR-105-5p chrX 152394458 152394480 - hsa-miR-16-5p chr3 160404754 160404775 + hsa-miR-3145-3p chr6 138435223 138435246 - hsa-miR-9-5p chr5 88666902 88666924 - hsa-miR-545-5p chrX 74287164 74287185 - hsa-miR-3940-3p chr19 6416434 6416455 - hsa-miR-1277-5p chrX 118386401 118386424 + hsa-miR-194-5p chr11 64891404 64891425 - hsa-miR-7853-5p chr6 6169380 6169400 - hsa-miR-24-3p chr9 95086064 95086085 + hsa-miR-654-3p chr14 101040269 101040290 + hsa-miR-345-5p chr14 100307876 100307897 + hsa-miR-199a-3p chr1 172144554 172144575 - hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-379-3p chr14 101022109 101022130 + hsa-miR-199b-3p chr9 128244745 128244766 - hsa-miR-411-3p chr14 101023375 101023396 + hsa-miR-15b-5p chr3 160404607 160404628 + hsa-miR-3129-5p chr2 189133082 189133103 - hsa-miR-4424 chr1 178677763 178677784 + hsa-miR-532-5p chrX 50003167 50003188 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC055860.1 chr11 18000542 18022931 - AD000090.1 chr19 35557956 35581954 + AL022311.1 chr22 37876148 37895563 + OIP5-AS1 chr15 41283990 41309737 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.