exRNAdisease

Entry Detail

---



General Information

Database ID: exR0783534 RNA Name: AC084125.2 RNA Type: lncRNA Chromosome: chr8 Starnd: - Coordinate: Start Site(bp): 144495458 End Site(bp): 144505444 External Links: ENSG00000255182

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CLUH chr17 2689386 2712663 - CSPG5 chr3 47562238 47580792 - EMD chrX 154379273 154381523 + EME2 chr16 1772810 1781708 + GATAD1 chr7 92447482 92460075 + IRS4 chrX 108732482 108736409 - KIFC2 chr8 144466043 144474202 + PHLPP1 chr18 62715541 62980433 + POU3F2 chr6 98834574 98839458 + RBFOX2 chr22 35738736 36028824 - SMU1 chr9 33041765 33076674 - TMEM250 chr9 136114581 136118875 - TNPO2 chr19 12699194 12724011 - ZCCHC14 chr16 87406246 87493024 - ZFAND6 chr15 80059568 80138393 + miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.