exRNAdisease

Entry Detail

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General Information

Database ID: exR0783564 RNA Name: AC106864.1 RNA Type: lncRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 112693047 End Site(bp): 112706810 External Links: ENSG00000250046

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ZNF532 chr18 58862600 58986480 + GNAS chr20 58839718 58911192 + RPS27A chr2 55231903 55235853 + CSNK2A1 chr20 472498 543835 - TJP2 chr9 69121264 69274615 + WDR59 chr16 74871362 75000173 - SMC5 chr9 70258978 70354873 + HSPA8 chr11 123057489 123063230 - SRSF7 chr2 38743599 38751494 - RRN3 chr16 15060022 15094317 - NECTIN3 chr3 111070071 111275563 + MERTK chr2 111898607 112029561 + WAC chr10 28532493 28623112 + CHD6 chr20 41402083 41618384 - NDUFB2 chr7 140690777 140722790 + SREBF2 chr22 41833079 41907307 + ZNF721 chr4 425815 499156 - XPO1 chr2 61477849 61538626 - FASN chr17 82078338 82098294 - KANSL1L chr2 210021421 210171409 - TPI1 chr12 6867119 6870948 + AC073896.1 chr12 56285916 56316059 - CNPY2 chr12 56309842 56316119 - EXOC4 chr7 133253073 134066589 + ACSL4 chrX 109624244 109733403 - ITM2C chr2 230864639 230879248 + PNN chr14 39175183 39183220 + NCL chr2 231453531 231483641 - TACO1 chr17 63600882 63608365 + MTMR12 chr5 32226994 32312987 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-302c-5p chr4 112648402 112648423 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC023509.1 chr12 53441741 53467528 + AC113189.2 chr17 7420103 7444081 + AC113189.4 chr17 7439506 7445966 + AL139819.1 chr10 100335563 100346390 - CCDC144NL-AS1 chr17 20868433 21002276 + CCND2-AS1 chr12 4247981 4276252 - MIR205HG chr1 209428817 209432838 + OIP5-AS1 chr15 41283990 41309737 + RMST chr12 97430884 97598415 + SNHG17 chr20 38419638 38435409 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.