exRNAdisease

Entry Detail

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General Information

Database ID: exR0783608 RNA Name: AD000090.1 RNA Type: lncRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 35557956 End Site(bp): 35581954 External Links: ENSG00000283907

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand EIF3K chr19 38619082 38636955 + MDN1 chr6 89642498 89819794 - UBA1 chrX 47190861 47215128 + BOLA2-SMG1P6 chr16 29443230 29454651 - FBRS chr16 30658431 30670810 + SPTY2D1 chr11 18606403 18634791 - POLR1A chr2 86020216 86106155 - PKN1 chr19 14433053 14471867 + CARM1 chr19 10871513 10923070 + KIAA0319L chr1 35433492 35557950 - MDM4 chr1 204516379 204558120 + PFN1 chr17 4945652 4949061 - ARHGAP19 chr10 97222173 97292673 - GFM1 chr3 158644278 158692575 + WRAP53 chr17 7686071 7703502 + PPP1CB chr2 28751640 28802940 + P4HTM chr3 48989889 49007153 + DKC1 chrX 154762742 154777689 + MACF1 chr1 39081316 39487177 + TMEM147 chr19 35545600 35547526 + TAOK2 chr16 29973868 29992261 + EIF2AK1 chr7 6022247 6059175 - EHD1 chr11 64851642 64888296 - CD2BP2 chr16 30350773 30355308 - SLC38A1 chr12 46183063 46270017 - GTPBP3 chr19 17334920 17342731 + SPCS3 chr4 176319966 176332245 + SLC37A2 chr11 125063067 125090312 + STOM chr9 121338987 121370304 - ERG28 chr14 75649791 75660876 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-let-7a-5p chr9 94175962 94175983 + hsa-miR-3654 chr7 133034860 133034878 - hsa-miR-4485-3p chr11 10508277 10508296 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - Z98883.1 chr16 568837 576257 + LINC01521 chr22 31346777 31348719 + AL355987.2 chr9 136800366 136829466 + STAG3L5P-PVRIG2P-PILRB chr7 100336104 100367831 + AC135050.3 chr16 31043150 31049868 + ESRG chr3 54632122 54639857 - AC067930.1 chr8 143579636 143580670 + AC020928.2 chr19 36773712 36775908 - AC015813.1 chr17 57989039 57994850 - AC009446.1 chr8 71675300 71702786 + AC022154.1 chr19 48619272 48624132 - AC007952.4 chr17 19112000 19112636 - SNHG11 chr20 38446343 38450940 + KCNQ1OT1 chr11 2608328 2699994 - AC156455.1 chr12 122063306 122068616 + AL356488.2 chr1 109100193 109100619 + AC245014.3 chr1 145281116 145281462 + NEAT1 chr11 65422774 65445540 + AC023509.1 chr12 53441741 53467528 + AC026362.1 chr12 122975320 122982907 + LINC00665 chr19 36313067 36331770 - AC124068.2 chr15 89335053 89336161 + XIST chrX 73820649 73852723 - SNHG25 chr17 64145970 64146476 + AL139393.2 chr6 160926269 160943110 + AL132780.1 chr14 22929607 22956374 + AL355075.4 chr14 20343048 20343685 - AL645608.1 chr1 1011997 1013193 - RMRP chr9 35657751 35658018 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.