exRNAdisease

Entry Detail

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General Information

Database ID: exR0783616 RNA Name: AGAP11 RNA Type: lncRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 86970741 End Site(bp): 87010126 External Links: ENSG00000271880

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AGAP1 chr2 235494043 236131800 + AGAP4 chr10 45825594 45853875 - AGAP5 chr10 73674285 73698159 - AGAP9 chr10 47501854 47523638 - ANKRD52 chr12 56237807 56258384 - ASXL1 chr20 32358330 32439319 + BMS1 chr10 42782795 42834937 + CHTF8 chr16 69118010 69132578 - FZD9 chr7 73433778 73436120 + HNRNPA1 chr12 54280193 54287088 + KPTN chr19 47475150 47484265 - PGPEP1 chr19 18340598 18369950 + PIGS chr17 28553383 28571794 - PRRC2A chr6 31620715 31637771 + RARS2 chr6 87513938 87589987 - RCOR1 chr14 102592649 102730561 + SEMA3C chr7 80742538 80922359 - TNPO2 chr19 12699194 12724011 - TPM2 chr9 35681992 35690056 - WDR73 chr15 84639281 84654343 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC022400.3 chr10 73674295 73730466 - AL136982.1 chr10 86992406 87010203 + AL512662.2 chr10 79904898 79951029 + SNHG11 chr20 38446343 38450940 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.