exRNAdisease

Entry Detail

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General Information

Database ID: exR0783623 RNA Name: AL022311.1 RNA Type: lncRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 37876148 End Site(bp): 37895563 External Links: ENSG00000279738

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand SMPD4 chr2 130151392 130182750 - PFKFB4 chr3 48517684 48562015 - DNMT3B chr20 32762385 32809356 + ETHE1 chr19 43506719 43527230 - SMARCA1 chrX 129446501 129523500 - HDGF chr1 156742109 156766925 - NDUFB9 chr8 124539101 124580648 + USO1 chr4 75724593 75814286 + SARNP chr12 55752463 55817724 - SLC35E1 chr19 16549831 16572415 - LGR4 chr11 27365961 27472790 - PGAM1 chr10 97426191 97433444 + EEF1G chr11 62559596 62574086 - ATP5MG chr11 118401606 118431496 + PIK3IP1 chr22 31281594 31292534 - ELL2 chr5 95885098 95961851 - DEK chr6 18223860 18264548 - UBR1 chr15 42942897 43106113 - TXNL4A chr18 79970813 80033949 - SEC14L1 chr17 77088749 77217101 + ITM2C chr2 230864639 230879248 + WDR89 chr14 63597039 63641861 - EIF3L chr22 37848868 37889407 + DGCR6 chr22 18906028 18914238 + BAZ2A chr12 56595596 56636816 - ATG4B chr2 241637213 241673857 + RGS5 chr1 163111121 163321791 - AAMP chr2 218264123 218270257 - XPOT chr12 64404392 64451125 + FAT1 chr4 186587794 186726722 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-503-5p chrX 134546371 134546393 - hsa-miR-4429 chr2 11540652 11540671 - hsa-miR-2115-3p chr3 48316381 48316402 - hsa-miR-671-5p chr7 151238449 151238471 + hsa-miR-320c chr18 24321716 24321735 + hsa-miR-1193 chr14 101030061 101030083 + hsa-miR-4677-3p chr1 243346225 243346246 + hsa-miR-320a-3p chr8 22244975 22244996 - hsa-miR-4701-5p chr12 48772014 48772035 - hsa-miR-376a-3p chr14 101040825 101040845 + hsa-miR-3194-5p chr20 51452948 51452968 - hsa-miR-370-3p chr14 100911186 100911207 + hsa-miR-655-3p chr14 101049610 101049631 + hsa-miR-6893-3p chr8 144435551 144435572 - hsa-miR-374c-5p chrX 74218561 74218582 + hsa-miR-374b-5p chrX 74218587 74218608 - hsa-miR-320d chr13 40727828 40727846 - hsa-miR-1294 chr5 154347153 154347174 + hsa-miR-3622b-5p chr8 27701726 27701745 - hsa-miR-376b-3p chr14 101040497 101040518 + hsa-miR-5691 chr11 9090350 9090371 - hsa-miR-485-5p chr14 101055427 101055448 + hsa-miR-320b chr1 224257049 224257070 - hsa-miR-6805-3p chr19 55388220 55388242 + hsa-miR-6884-5p chr17 40026383 40026404 - hsa-miR-369-3p chr14 101065641 101065661 + hsa-miR-155-5p chr21 25573983 25574006 + hsa-miR-588 chr6 126484646 126484666 + hsa-miR-1287-5p chr10 98395271 98395292 - hsa-miR-374a-5p chrX 74287325 74287346 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007326.5 chr22 18936411 18947741 + AC079781.5 chr7 97851688 97972985 - AP000317.2 chr21 34073592 34360033 + GUSBP11 chr22 23638487 23717356 - KBTBD11-OT1 chr8 1971397 1976478 + MALAT1 chr11 65497688 65506516 + MIR155HG chr21 25561909 25575168 + MIR663AHG chr20 26167817 26251546 - OIP5-AS1 chr15 41283990 41309737 + RMRP chr9 35657751 35658018 - SNHG1 chr11 62851984 62855953 - SNHG6 chr8 66921684 66926398 - ZFAS1 chr20 49278178 49299600 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.