exRNAdisease

Entry Detail

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General Information

Database ID: exR0783625 RNA Name: AL031595.3 RNA Type: lncRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 44139365 End Site(bp): 44153626 External Links: ENSG00000280434

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADSL chr22 40346500 40390463 + AL022238.4 chr22 40346529 40410054 + ALDH18A1 chr10 95605941 95656711 - CES2 chr16 66934444 66945096 + CFLAR chr2 201116154 201176687 + CS chr12 56271699 56300391 - FAM122A chr9 68780065 68785566 + HMG20B chr19 3572777 3579088 + LIMK2 chr22 31212239 31280080 + MAPK12 chr22 50245450 50261716 - NBEAL2 chr3 46979666 47009704 + NFATC4 chr14 24365673 24379604 + NOSIP chr19 49555468 49590262 - OLFML3 chr1 113979391 114035572 + PARVB chr22 43999211 44172949 + PKN3 chr9 128702503 128720916 + POTEM chr14 18967434 19003752 + RIMBP3C chr22 21545357 21551461 - RPL27A chr11 8682788 8714759 + RPS29 chr14 49570984 49599164 - RTL6 chr22 44492583 44498233 - SBF1 chr22 50445000 50475035 - SEC23B chr20 18507520 18561415 + SMC4 chr3 160399274 160434954 + TMED9 chr5 177592203 177597242 + ZFAND5 chr9 72351413 72365235 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-130a-3p chr11 57641252 57641273 + hsa-miR-301a-3p chr17 59151149 59151171 - hsa-miR-130b-3p chr22 21653354 21653375 + hsa-miR-524-5p chr19 53711017 53711038 + hsa-miR-520d-5p chr19 53720111 53720130 + hsa-miR-454-3p chr17 59137787 59137809 - hsa-miR-301b-3p chr22 21653025 21653047 + hsa-miR-3140-3p chr4 152489336 152489357 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.