exRNAdisease

Entry Detail

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General Information

Database ID: exR0783635 RNA Name: AL096870.2 RNA Type: lncRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 24209646 End Site(bp): 24215987 External Links: ENSG00000260669

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand STAT1 chr2 190908460 191020960 - TPT1 chr13 45333471 45341370 - ATP5F1B chr12 56638175 56645984 - UBR4 chr1 19074510 19210266 - HLA-DRA chr6 32439878 32445046 + PLCG2 chr16 81739097 81962685 + AC120057.2 chr17 7240427 7244635 - RFC3 chr13 33818069 33966558 + CNBP chr3 129169484 129183922 - LPL chr8 19901717 19967259 + ADAM10 chr15 58588809 58749791 - TMBIM1 chr2 218274197 218292586 - NEDD8 chr14 24216857 24232367 - ANXA6 chr5 151100706 151157785 - DCTN5 chr16 23641466 23677472 + STAT6 chr12 57095408 57132139 - GNPDA1 chr5 141991749 142013041 - TM9SF1 chr14 24189149 24195687 - HERC5 chr4 88457119 88506163 + HLA-DPA1 chr6 33064569 33080775 - PEG10 chr7 94656325 94669695 + EIF4EBP2 chr10 70404145 70428618 + GABARAP chr17 7240008 7242449 - OCIAD2 chr4 48885019 48906937 - OTUB1 chr11 63985853 64001811 + TMSB4X chrX 12975110 12977227 + RPS23 chr5 82273320 82278396 - TRAF4 chr17 28744005 28750956 + SMIM26 chr20 18567347 18569563 + CENPV chr17 16342534 16353656 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-7-5p chr19 4770700 4770723 + hsa-miR-4492 chr11 118910765 118910781 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008050.1 chr14 76495363 76726712 - AL450998.2 chr1 15834474 15848147 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.