exRNAdisease

Entry Detail

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General Information

Database ID: exR0783642 RNA Name: AL132655.2 RNA Type: lncRNA Chromosome: chr20 Starnd: - Coordinate: Start Site(bp): 58817132 End Site(bp): 58817725 External Links: ENSG00000268649

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACLY chr17 41866917 41930542 - EEF1B2 chr2 206159585 206162928 + EEF2 chr19 3976056 3985463 - GNL1 chr6 30541377 30557174 - IDH3B chr20 2658395 2664219 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-296-5p chr20 58817661 58817681 - hsa-miR-483-3p chr11 2134142 2134162 - hsa-miR-485-5p chr14 101055427 101055448 + hsa-miR-129-1-3p chr7 128207920 128207941 + hsa-miR-129-2-3p chr11 43581450 43581471 + hsa-miR-532-3p chrX 50003204 50003225 + hsa-miR-2114-3p chrX 150228052 150228072 + hsa-miR-1306-5p chr22 20086072 20086093 + hsa-miR-6823-3p chr3 48549961 48549981 - hsa-miR-6884-5p chr17 40026383 40026404 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.