exRNAdisease

Entry Detail

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General Information

Database ID: exR0783677 RNA Name: AL355075.4 RNA Type: lncRNA Chromosome: chr14 Starnd: - Coordinate: Start Site(bp): 20343048 End Site(bp): 20343685 External Links: ENSG00000259001

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AARS2 chr6 44298731 44313347 - ABCF3 chr3 184186023 184194012 + ABI1 chr10 26746593 26861087 - AC010422.3 chr19 12643831 12648397 - AC026464.4 chr16 69299682 69322700 + AC068946.1 chr2 219075329 219170827 - AC093668.1 chr7 102541501 102592444 - ACIN1 chr14 23058564 23095614 - ACLY chr17 41866917 41930542 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ACTR1B chr2 97655939 97664044 - AGPAT3 chr21 43865223 43987592 + AKAP13 chr15 85380571 85749358 + AKT2 chr19 40230317 40285536 - ALDOA chr16 30064164 30070457 + AC008878.3 chr19 7382834 7470241 + ACAP3 chr1 1292390 1309609 - AKAP8 chr19 15353385 15379798 - AL512785.2 chr1 162365407 162383531 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-296-5p chr20 58817661 58817681 - hsa-miR-328-3p chr16 67202327 67202348 - hsa-miR-326 chr11 75335108 75335127 - hsa-miR-485-3p chr14 101055464 101055485 + hsa-miR-556-5p chr1 162342561 162342582 + hsa-miR-627-5p chr15 42199630 42199651 - hsa-miR-641 chr19 40282603 40282626 - hsa-miR-650 chr22 22822791 22822811 + hsa-miR-663a chr20 26208243 26208264 - hsa-miR-542-3p chrX 134541364 134541385 - hsa-miR-330-5p chr19 45639049 45639070 - hsa-miR-1296-5p chr10 63373012 63373033 - hsa-miR-1908-5p chr11 61815209 61815229 - hsa-miR-3612 chr12 128294105 128294126 + hsa-miR-3617-5p chr20 45705150 45705171 - hsa-miR-3150b-3p chr8 95072924 95072944 - hsa-miR-4784 chr2 131491208 131491227 - hsa-miR-539-3p chr14 101047369 101047390 + hsa-miR-1306-5p chr22 20086072 20086093 + hsa-miR-6787-5p chr17 82236673 82236694 + hsa-miR-6780a-5p chr17 42708124 42708146 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC006511.5 chr12 8014093 8019007 - AC007952.4 chr17 19112000 19112636 - AC009133.2 chr16 29806496 29807732 - AC010327.5 chr19 55216660 55221616 + AC010442.1 chr5 466124 473098 - AC010536.1 chr16 87693537 87696147 - AC051619.7 chr15 45200325 45200632 - AC099778.1 chr3 47379089 47380999 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL049796.1 chr1 93847174 93848939 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.