Entry Detail



General Information

Database ID:exR0783687
RNA Name:AL359924.1
RNA Type:lncRNA
Chromosome:chr1
Starnd:+
Coordinate:
Start Site(bp):237862175End Site(bp):237928321
External Links:ENSG00000237250



Disease Information

Disease Name:Colorectal Cancer
Disease Category:Cancers
MeSH ID:D003110
Type:Neoplasms/Digestive System Neoplasms
Alias:Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon



Expression Detail

GEO ID:GSE83353
Description:Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle.
Experimental Design:Cancer vs Control
Case Disease Type:Colorectal Cancer
Case Disease SubType:NA
Case Sample:Colorectal Cancer
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABRACL
chr6
139028745
139043302
+
ACTA1
chr1
229431245
229434098
-
ACTB
chr7
5527148
5563784
-
ACTC1
chr15
34790230
34795549
-
ACTG1
chr17
81509971
81523847
-
AKR1A1
chr1
45550543
45570049
+
AC008878.3
chr19
7382834
7470241
+
AC114490.3
chr1
34974356
34985313
-
ACTG2
chr2
73892314
73919865
+
ADA
chr20
44619522
44652233
-
ADAM8
chr10
133262420
133276868
-
AK4
chr1
65147549
65232145
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-let-7a-5p
chr9
94175962
94175983
+
hsa-miR-15a-5p
chr13
50049167
50049188
-
hsa-miR-16-5p
chr3
160404754
160404775
+
hsa-miR-15b-5p
chr3
160404607
160404628
+
hsa-miR-195-5p
chr17
7017667
7017687
-
hsa-miR-326
chr11
75335108
75335127
-
hsa-miR-424-5p
chrX
134546680
134546701
-
hsa-miR-497-5p
chr17
7017979
7017999
-
hsa-miR-493-3p
chr14
100869116
100869137
+
hsa-miR-588
chr6
126484646
126484666
+
hsa-miR-371a-5p
chr19
53787680
53787699
+
hsa-miR-330-5p
chr19
45639049
45639070
-
hsa-miR-942-5p
chr1
117094655
117094676
+
hsa-miR-1287-5p
chr10
98395271
98395292
-
hsa-miR-3200-5p
chr22
30731569
30731590
+
hsa-miR-4701-5p
chr12
48772014
48772035
-
hsa-miR-5691
chr11
9090350
9090371
-
hsa-miR-6805-3p
chr19
55388220
55388242
+
hsa-miR-6838-5p
chr7
44073407
44073428
-
circRNA targets:NA
lncRNA targets:NA
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:27441409
Title:Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle.
Author:Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E.
Journal:PLoS One. 2016 Jul 21;11(7):e0159522.
Description:A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.