exRNAdisease

Entry Detail

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General Information

Database ID: exR0783734 RNA Name: ARHGAP27P1-BPTFP1-KPNA2P3 RNA Type: lncRNA Chromosome: chr17 Starnd: - Coordinate: Start Site(bp): 64749663 End Site(bp): 64781707 External Links: ENSG00000215769

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010132.3 chr7 42909273 42932174 - ABI2 chr2 203328239 203447728 + ADGRG6 chr6 142301854 142446266 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4465 chr6 140683855 140683876 + hsa-miR-665 chr14 100875075 100875094 + hsa-miR-1297 chr13 54311981 54311997 - hsa-let-7d-5p chr9 94178841 94178862 + hsa-miR-216a-3p chr2 55988981 55989002 - hsa-miR-495-3p chr14 101033804 101033825 + hsa-miR-376c-3p chr14 101039732 101039752 + hsa-miR-520c-3p chr19 53707506 53707527 + hsa-miR-21-5p chr17 59841273 59841294 + hsa-miR-196b-5p chr7 27169528 27169549 - hsa-miR-520b-3p chr19 53701267 53701287 + hsa-miR-627-5p chr15 42199630 42199651 - hsa-miR-17-5p chr13 91350618 91350640 + hsa-miR-221-3p chrX 45746180 45746202 - hsa-miR-582-5p chr5 59703666 59703688 - hsa-miR-520e-3p chr19 53675764 53675784 + hsa-miR-26b-5p chr2 218402657 218402677 + hsa-miR-302d-3p chr4 112648006 112648028 - hsa-miR-539-3p chr14 101047369 101047390 + hsa-miR-222-3p chrX 45747036 45747056 - hsa-miR-624-3p chr14 31014669 31014689 - hsa-miR-302a-3p chr4 112648186 112648208 - hsa-miR-373-3p chr19 53788748 53788770 + hsa-miR-106a-5p chrX 134170244 134170266 - hsa-miR-302c-3p chr4 112648366 112648388 - hsa-miR-95-3p chr4 8005312 8005333 - hsa-miR-93-5p chr7 100093815 100093837 - hsa-miR-98-5p chrX 53556299 53556320 - hsa-let-7f-5p chrX 53557246 53557267 - hsa-miR-128-3p chr2 135665446 135665466 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.