exRNAdisease

Entry Detail

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General Information

Database ID: exR0783749 RNA Name: BX284668.2 RNA Type: lncRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 16870945 End Site(bp): 16883659 External Links: ENSG00000228549

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMP chr2 218264123 218270257 - AC004922.1 chr7 99325879 99394653 + AC093668.1 chr7 102541501 102592444 - ADGRL1 chr19 14147743 14206187 - ADRM1 chr20 62302093 62308862 + AKAP17A chrX 1591604 1602520 + AC026954.2 chr17 7312661 7319174 - AC107871.1 chr15 68184032 68229718 - ADAM17 chr2 9488486 9556732 - AK4 chr1 65147549 65232145 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-199a-5p chr1 172144592 172144614 - hsa-miR-199b-5p chr9 128244783 128244805 - hsa-miR-518f-3p chr19 53700067 53700087 + hsa-miR-518b chr19 53702787 53702808 + hsa-miR-518c-3p chr19 53708796 53708818 + hsa-miR-518a-3p chr19 53739385 53739406 + hsa-miR-518d-3p chr19 53734929 53734949 + hsa-miR-1252-5p chr12 79419261 79419282 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007952.4 chr17 19112000 19112636 - AC016831.1 chr7 130876809 130913310 - AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.